Wall clock time and date at job start Sun Mar 29 2020 22:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 110.99723 * 2 1 4 4 C 1.53043 * 109.52410 * 174.16265 * 3 2 1 5 5 C 1.53119 * 109.27960 * 59.17697 * 4 3 2 6 6 C 1.53098 * 109.15392 * 302.34568 * 5 4 3 7 7 C 1.46847 * 111.00144 * 235.79057 * 2 1 3 8 8 H 1.09002 * 109.46448 * 65.81961 * 7 2 1 9 9 C 1.50701 * 109.46132 * 305.84214 * 7 2 1 10 10 O 1.21298 * 120.00010 * 339.97964 * 9 7 2 11 11 N 1.34774 * 120.00163 * 159.97715 * 9 7 2 12 12 C 1.37094 * 120.00069 * 179.97438 * 11 9 7 13 13 H 1.07997 * 119.99992 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99668 * 180.02562 * 12 11 9 15 15 N 1.31420 * 119.99643 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00314 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47370 * 89.99795 * 16 14 12 18 18 H 1.48508 * 109.47071 * 210.00140 * 16 14 12 19 19 H 1.48498 * 109.46919 * 329.99562 * 16 14 12 20 20 H 1.09003 * 109.46681 * 184.21220 * 1 2 3 21 21 H 1.09002 * 109.47278 * 304.20972 * 1 2 3 22 22 H 1.08994 * 109.47129 * 64.21604 * 1 2 3 23 23 H 1.09004 * 109.46227 * 294.17472 * 3 2 1 24 24 H 1.08995 * 109.46481 * 54.14360 * 3 2 1 25 25 H 1.09000 * 109.50302 * 179.11836 * 4 3 2 26 26 H 1.08998 * 109.49757 * 299.23518 * 4 3 2 27 27 H 1.09005 * 109.52413 * 62.25169 * 5 4 3 28 28 H 1.08995 * 109.52669 * 182.44397 * 5 4 3 29 29 H 1.09001 * 109.51133 * 297.71708 * 6 5 4 30 30 H 1.09000 * 109.49048 * 177.59939 * 6 5 4 31 31 H 0.96998 * 119.99797 * 0.02562 * 11 9 7 32 32 H 0.96993 * 119.99470 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5183 -0.8711 -1.0207 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3985 -2.1545 -1.1204 10 8 0.9172 -2.5976 -0.0990 11 7 1.3995 -2.8997 -2.2434 12 6 0.8570 -4.1587 -2.2311 13 1 0.4285 -4.5532 -1.3216 14 6 0.8585 -4.9271 -3.3888 15 7 0.3381 -6.1338 -3.3771 16 14 1.6003 -4.2450 -4.9616 17 1 3.0415 -4.5976 -5.0228 18 1 0.8980 -4.8275 -6.1333 19 1 1.4509 -2.7677 -4.9792 20 1 -0.3633 -1.0249 0.0755 21 1 -0.3634 0.5778 0.8499 22 1 -0.3633 0.4470 -0.9253 23 1 1.7324 1.8608 -0.9376 24 1 1.5634 1.9257 0.8329 25 1 3.9098 2.3514 0.1309 26 1 3.7813 0.8569 1.0906 27 1 3.8887 1.0355 -1.9561 28 1 5.1997 0.4715 -0.8906 29 1 3.7814 -1.3833 -0.0951 30 1 3.9102 -1.4299 -1.8706 31 1 1.7846 -2.5455 -3.0601 32 1 0.3388 -6.6700 -4.1854 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260048238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:35 Heat of formation + Delta-G solvation = -58.490808 kcal Electronic energy + Delta-G solvation = -14677.208558 eV Core-core repulsion = 12250.526186 eV Total energy + Delta-G solvation = -2426.682372 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10280 -38.80684 -36.07669 -34.39879 -33.76799 -32.02934 -28.02298 -26.94101 -24.48399 -23.71113 -21.37351 -20.84473 -20.05540 -17.89471 -17.04641 -16.38071 -16.17189 -15.66433 -15.34153 -15.20728 -14.89868 -14.45199 -14.07652 -13.89768 -13.67474 -13.19401 -12.88738 -12.62959 -12.45635 -12.28872 -12.02474 -11.73513 -11.59040 -11.48719 -11.26813 -10.27240 -10.23862 -9.21516 -8.44038 -6.04974 1.27242 1.32377 1.41406 1.88612 2.20117 2.63559 3.10549 3.13975 3.86070 3.92703 4.04446 4.17591 4.23707 4.37257 4.47052 4.56948 4.62327 4.79840 4.88118 5.00476 5.09754 5.14279 5.21294 5.27933 5.48883 5.51159 5.88885 6.02303 6.25501 6.57045 6.84742 7.35659 7.92327 8.73560 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042345 B = 0.009179 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.083930 B = 3049.681755 C = 3411.253616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.053 3.947 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.108 4.108 7 C 0.085 3.915 8 H 0.067 0.933 9 C 0.454 3.546 10 O -0.605 6.605 11 N -0.589 5.589 12 C -0.329 4.329 13 H 0.056 0.944 14 C -0.012 4.012 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.253 1.253 18 H -0.272 1.272 19 H -0.236 1.236 20 H 0.050 0.950 21 H 0.083 0.917 22 H 0.027 0.973 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.387 0.613 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 17.893 -1.245 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.074 4.074 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.146 4.146 7 C -0.027 4.027 8 H 0.085 0.915 9 C 0.242 3.758 10 O -0.489 6.489 11 N -0.230 5.230 12 C -0.458 4.458 13 H 0.074 0.926 14 C -0.211 4.211 15 N -0.572 5.572 16 Si 0.781 3.219 17 H -0.178 1.178 18 H -0.197 1.197 19 H -0.159 1.159 20 H 0.069 0.931 21 H 0.102 0.898 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.223 0.777 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.861 17.177 -0.225 18.891 hybrid contribution -0.480 -0.284 -1.424 1.530 sum 7.380 16.892 -1.649 18.508 Atomic orbital electron populations 1.22438 0.87295 1.02337 1.00590 1.61567 1.08081 1.14522 1.42303 1.22288 0.96659 0.87072 1.01385 1.21631 0.93421 1.01395 0.98832 1.21587 1.00789 0.93112 0.99472 1.21600 0.90709 0.99856 1.02482 1.21465 0.97145 0.90308 0.93793 0.91527 1.20761 0.83233 0.88550 0.83273 1.90510 1.50541 1.74284 1.33547 1.42069 1.54974 1.14680 1.11234 1.19009 1.37032 0.91168 0.98621 0.92572 1.26087 0.97327 0.95449 1.02250 1.69800 1.45506 1.10953 1.30952 0.85418 0.79468 0.80108 0.76916 1.17772 1.19670 1.15939 0.93106 0.89790 0.95487 0.93978 0.89446 0.88528 0.92156 0.90579 0.89589 0.92642 0.90578 0.77740 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.10 127.69 1.16 1.89 16 2 N -0.54 -17.86 4.51 -901.57 -4.06 -21.92 16 3 C 0.05 1.21 5.46 86.33 0.47 1.68 16 4 C -0.12 -2.21 6.09 30.65 0.19 -2.02 16 5 C -0.11 -2.22 6.00 30.67 0.18 -2.03 16 6 C -0.11 -3.13 5.35 30.64 0.16 -2.97 16 7 C 0.08 2.96 2.24 44.19 0.10 3.06 16 8 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 9 C 0.45 21.76 6.22 87.66 0.55 22.30 16 10 O -0.60 -34.96 14.10 -3.08 -0.04 -35.00 16 11 N -0.59 -28.95 5.09 -306.98 -1.56 -30.51 16 12 C -0.33 -19.69 10.16 84.04 0.85 -18.84 16 13 H 0.06 3.99 7.39 -2.91 -0.02 3.96 16 14 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 15 N -0.93 -56.61 13.96 21.67 0.30 -56.31 16 16 Si 0.96 39.30 27.74 68.60 1.90 41.20 16 17 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.24 -8.27 6.52 99.48 0.65 -7.62 16 20 H 0.05 2.22 5.63 -2.39 -0.01 2.20 16 21 H 0.08 2.39 8.09 -2.39 -0.02 2.37 16 22 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 25 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.39 16.03 5.76 -92.71 -0.53 15.50 16 32 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -74.49 258.79 1.18 -73.31 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.51 Total: 26.38 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 4.13 Total: 2.86 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -5.32 Total: -108.74 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.04 Total: -35.00 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.90 Total: 41.20 kcal Total: -74.49 1.18 -73.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260048238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.823 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds