Wall clock time and date at job start Sun Mar 29 2020 21:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.47311 * 126.69075 * 269.71381 * 3 2 1 5 5 C 1.51585 * 103.58974 * 179.97438 * 4 3 2 6 6 O 1.21236 * 127.15464 * 180.02562 * 5 4 3 7 7 N 1.34764 * 105.68651 * 0.33048 * 5 4 3 8 8 C 1.46495 * 124.17664 * 179.74588 * 7 5 4 9 9 C 1.50703 * 109.47224 * 270.04082 * 8 7 5 10 10 H 1.08001 * 119.99669 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00270 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00032 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00255 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47171 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47314 * 120.00054 * 13 11 9 16 16 H 1.48504 * 109.47377 * 240.00237 * 13 11 9 17 17 C 1.33788 * 111.64313 * 359.78482 * 7 5 4 18 18 O 1.21541 * 123.76631 * 180.02562 * 17 7 5 19 19 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 23 23 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 24 24 H 1.09000 * 110.59690 * 298.55823 * 4 3 2 25 25 H 1.08995 * 110.59555 * 61.50827 * 4 3 2 26 26 H 1.09001 * 109.47395 * 30.04386 * 8 7 5 27 27 H 1.09001 * 109.47409 * 150.04575 * 8 7 5 28 28 H 0.97002 * 120.00301 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3174 2.2090 -1.1812 5 6 2.7788 3.5248 -0.5865 6 8 3.1320 4.5164 -1.1880 7 7 2.7213 3.3607 0.7499 8 6 3.0890 4.3928 1.7223 9 6 4.5540 4.2713 2.0542 10 1 5.1515 3.5024 1.5870 11 6 5.1318 5.1423 2.9533 12 7 4.4044 6.0789 3.5217 13 14 6.9479 4.9922 3.3641 14 1 7.5377 3.8664 2.5959 15 1 7.6428 6.2542 3.0041 16 1 7.1070 4.7368 4.8183 17 6 2.2878 2.1384 1.0787 18 8 2.1520 1.7553 2.2242 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.1111 1.7565 -1.7757 25 1 1.4211 2.3550 -1.7840 26 1 2.8929 5.3777 1.2985 27 1 2.4991 4.2637 2.6298 28 1 4.8109 6.6920 4.1540 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087172.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:35 Heat of formation + Delta-G solvation = -43.806037 kcal Electronic energy + Delta-G solvation = -14243.402224 eV Core-core repulsion = 11681.523537 eV Total energy + Delta-G solvation = -2561.878687 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.55048 -37.89512 -35.78626 -34.94047 -32.92972 -31.19004 -27.64452 -26.99749 -23.94408 -22.82069 -21.35173 -19.45244 -17.11506 -16.65307 -16.13479 -15.88442 -15.02660 -14.83721 -14.15212 -13.68281 -13.65740 -13.33730 -13.31700 -12.43217 -12.19668 -12.01403 -11.52136 -11.16851 -11.09334 -10.76367 -10.42734 -9.99095 -9.85688 -9.49048 -8.78682 -8.50923 -8.48420 -6.13034 -4.17999 2.28087 2.71387 3.29320 3.35439 3.40202 3.61773 3.79095 4.40026 4.57878 4.87043 5.11639 5.22648 5.28810 5.32153 5.35259 5.57089 5.75616 6.12387 6.22928 6.62524 6.77122 7.13871 7.24276 7.80272 7.99516 8.04475 8.12995 8.73514 8.88228 9.46803 10.96523 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.041888 B = 0.009054 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.290531 B = 3091.873481 C = 3346.482661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.150 3.850 3 N -0.640 5.640 4 C 0.062 3.938 5 C 0.517 3.483 6 O -0.479 6.479 7 N -0.558 5.558 8 C 0.248 3.752 9 C -0.533 4.533 10 H 0.060 0.940 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.905 3.095 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.698 3.302 18 O -0.541 6.541 19 H 0.056 0.944 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 -10.601 -9.149 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.029 3.971 3 N -0.381 5.381 4 C -0.064 4.064 5 C 0.303 3.697 6 O -0.351 6.351 7 N -0.301 5.301 8 C 0.131 3.869 9 C -0.571 4.571 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.733 3.267 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.207 1.207 17 C 0.401 3.599 18 O -0.414 6.414 19 H 0.075 0.925 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.902 -10.162 -8.626 14.577 hybrid contribution 0.972 -0.006 0.233 0.999 sum -4.931 -10.167 -8.393 14.075 Atomic orbital electron populations 1.22220 0.95996 1.02162 1.02705 1.21161 0.93919 0.78763 1.03277 1.47722 1.70485 1.14205 1.05693 1.22430 1.03210 0.90337 0.90444 1.20667 0.76981 0.88939 0.83120 1.90750 1.44904 1.32918 1.66488 1.46855 1.58595 1.15020 1.09581 1.19592 0.96941 0.84023 0.86327 1.21291 0.93617 1.16355 1.25861 0.92190 1.24903 0.98837 0.94750 0.95335 1.69933 1.36141 1.17999 1.28884 0.86322 0.84148 0.78043 0.78223 1.19720 1.20726 1.20696 1.15996 0.77934 0.80975 0.85034 1.90916 1.57287 1.74399 1.18812 0.92506 0.91926 0.91395 0.89589 0.90155 0.87067 0.87235 0.93012 0.92883 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 15 2 C 0.15 1.66 6.87 -4.04 -0.03 1.63 15 3 N -0.64 -9.72 3.02 -180.02 -0.54 -10.27 15 4 C 0.06 0.83 7.66 -4.31 -0.03 0.80 15 5 C 0.52 10.17 8.31 -10.56 -0.09 10.08 15 6 O -0.48 -10.77 17.76 5.60 0.10 -10.67 15 7 N -0.56 -12.67 2.59 -122.02 -0.32 -12.98 15 8 C 0.25 6.74 5.45 -5.19 -0.03 6.71 15 9 C -0.53 -15.54 9.39 -34.44 -0.32 -15.86 15 10 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 11 C 0.06 1.87 5.46 -17.82 -0.10 1.78 15 12 N -0.89 -26.63 13.29 55.43 0.74 -25.89 15 13 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 15 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 17 C 0.70 14.70 8.31 -88.03 -0.73 13.97 15 18 O -0.54 -13.25 17.15 5.33 0.09 -13.16 15 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.09 1.04 8.03 -51.93 -0.42 0.62 15 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 15 24 H 0.11 1.19 8.14 -51.93 -0.42 0.76 15 25 H 0.11 1.11 8.14 -51.93 -0.42 0.68 15 26 H 0.05 1.46 8.01 -51.93 -0.42 1.05 15 27 H 0.05 1.53 7.86 -51.93 -0.41 1.12 15 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 255.21 15.07 3.85 3.85 Total: -1.00 -34.34 255.21 -5.38 -39.72 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: -3.32 Total: -5.54 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: -0.95 Total: 17.81 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.12 Total: -49.14 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.19 Total: -23.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.34 -5.38 -39.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087172.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.088 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds