Wall clock time and date at job start Sun Mar 29 2020 21:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46766 * 124.34988 * 2 1 4 4 C 1.54480 * 105.47089 * 196.74972 * 3 2 1 5 5 H 1.09003 * 110.96745 * 92.70719 * 4 3 2 6 6 C 1.50699 * 110.96829 * 216.46309 * 4 3 2 7 7 O 1.21300 * 119.99879 * 0.02562 * 6 4 3 8 8 N 1.34774 * 119.99918 * 180.02562 * 6 4 3 9 9 C 1.37097 * 119.99734 * 180.02562 * 8 6 4 10 10 H 1.08005 * 120.00408 * 0.02562 * 9 8 6 11 11 C 1.38950 * 119.99839 * 179.97438 * 9 8 6 12 12 N 1.31412 * 120.00085 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00179 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.46912 * 90.00044 * 13 11 9 15 15 H 1.48502 * 109.47358 * 209.99789 * 13 11 9 16 16 H 1.48497 * 109.47104 * 329.99945 * 13 11 9 17 17 C 1.54618 * 101.76574 * 334.58387 * 4 3 2 18 18 C 1.34413 * 124.34722 * 179.69792 * 2 1 3 19 19 O 1.21284 * 124.94565 * 359.83615 * 18 2 1 20 20 H 1.08999 * 109.47196 * 89.99909 * 1 2 3 21 21 H 1.08997 * 109.47154 * 210.00067 * 1 2 3 22 22 H 1.09002 * 109.47147 * 329.99855 * 1 2 3 23 23 H 1.09008 * 110.24439 * 315.74963 * 3 2 1 24 24 H 1.08998 * 110.24767 * 77.66036 * 3 2 1 25 25 H 0.96993 * 119.99935 * 359.97438 * 8 6 4 26 26 H 0.97004 * 120.00432 * 180.02562 * 12 11 9 27 27 H 1.09008 * 110.48943 * 143.47618 * 17 4 3 28 28 H 1.09000 * 110.48637 * 265.98667 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7027 0.7475 -0.4291 5 1 3.8327 0.8408 -1.5073 6 6 4.7705 1.5131 0.3090 7 8 4.4590 2.3634 1.1160 8 7 6.0715 1.2529 0.0724 9 6 7.0429 1.9490 0.7442 10 1 6.7656 2.7056 1.4634 11 6 8.3843 1.6805 0.5007 12 7 9.3155 2.3473 1.1450 13 14 8.8640 0.3714 -0.7426 14 1 9.0006 0.9906 -2.0855 15 1 10.1583 -0.2385 -0.3448 16 1 7.8147 -0.6784 -0.7859 17 6 3.6898 -0.7378 0.0004 18 6 2.2234 -1.1097 0.0059 19 8 1.7945 -2.2442 0.0147 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9011 1.9365 -0.7137 24 1 2.3255 1.6465 0.9990 25 1 6.3206 0.5727 -0.5726 26 1 10.2519 2.1601 0.9747 27 1 4.2354 -1.3479 -0.7196 28 1 4.1177 -0.8506 0.9965 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306213786.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:23 Heat of formation + Delta-G solvation = -66.882313 kcal Electronic energy + Delta-G solvation = -13991.963919 eV Core-core repulsion = 11429.084569 eV Total energy + Delta-G solvation = -2562.879349 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42782 -38.33195 -36.04750 -34.12375 -32.75244 -31.65861 -27.54419 -26.99091 -24.99270 -22.30560 -19.51684 -19.34345 -18.37367 -16.86592 -16.52393 -15.41175 -15.23374 -14.79367 -14.19043 -13.64768 -13.53178 -13.33171 -12.93573 -12.63426 -12.37625 -12.27562 -12.02609 -11.35334 -11.17762 -11.08316 -10.64813 -10.07024 -9.80610 -9.68330 -8.76813 -8.57023 -8.29864 -6.40910 -3.93263 2.66741 2.97552 3.01867 3.06249 3.11504 3.53006 4.02472 4.25742 4.52542 4.70662 5.07452 5.13686 5.22977 5.30129 5.35031 5.63272 5.65611 5.70162 5.87220 5.97333 6.18390 6.53695 7.12484 7.45228 8.02365 8.23120 8.45981 8.82808 9.30655 9.66571 10.71471 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.050266 B = 0.008055 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.907618 B = 3475.270538 C = 3876.073553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.625 5.625 3 C 0.119 3.881 4 C -0.116 4.116 5 H 0.103 0.897 6 C 0.456 3.544 7 O -0.574 6.574 8 N -0.578 5.578 9 C -0.310 4.310 10 H 0.121 0.879 11 C 0.045 3.955 12 N -0.875 5.875 13 Si 0.878 3.122 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.267 1.267 17 C -0.147 4.147 18 C 0.520 3.480 19 O -0.542 6.542 20 H 0.054 0.946 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.373 0.627 26 H 0.275 0.725 27 H 0.105 0.895 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 -4.495 -5.777 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.359 5.359 3 C -0.004 4.004 4 C -0.138 4.138 5 H 0.122 0.878 6 C 0.242 3.758 7 O -0.458 6.458 8 N -0.215 5.215 9 C -0.439 4.439 10 H 0.139 0.861 11 C -0.159 4.159 12 N -0.514 5.514 13 Si 0.704 3.296 14 H -0.195 1.195 15 H -0.200 1.200 16 H -0.192 1.192 17 C -0.187 4.187 18 C 0.308 3.692 19 O -0.419 6.419 20 H 0.073 0.927 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.206 0.794 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.441 -4.456 -5.182 13.327 hybrid contribution 0.624 -0.893 -0.996 1.476 sum -10.817 -5.349 -6.179 13.557 Atomic orbital electron populations 1.21504 0.78282 1.03055 1.01644 1.48249 1.06486 1.07800 1.73373 1.22014 0.88141 0.86119 1.04084 1.22137 0.95222 0.94695 1.01787 0.87842 1.19206 0.82877 0.86933 0.86814 1.90570 1.81322 1.35949 1.37952 1.42182 1.05456 1.35434 1.38476 1.19459 0.84735 1.18381 1.21281 0.86094 1.25061 0.95444 0.97730 0.97674 1.69617 1.00772 1.40293 1.40743 0.86694 0.79339 0.81707 0.81874 1.19460 1.20012 1.19245 1.22378 0.94625 0.96102 1.05632 1.20894 0.89297 0.84210 0.74752 1.90689 1.78842 1.21206 1.51201 0.92731 0.90875 0.90939 0.90175 0.88660 0.79427 0.91414 0.87692 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 10.97 59.85 0.66 1.68 15 2 N -0.62 -8.56 3.33 -180.28 -0.60 -9.16 15 3 C 0.12 1.66 6.71 -3.12 -0.02 1.64 15 4 C -0.12 -1.77 3.54 -90.15 -0.32 -2.09 15 5 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 6 C 0.46 9.54 7.01 -10.99 -0.08 9.46 15 7 O -0.57 -14.25 15.08 5.54 0.08 -14.17 15 8 N -0.58 -12.94 5.09 -10.96 -0.06 -13.00 15 9 C -0.31 -8.37 10.16 -14.93 -0.15 -8.53 15 10 H 0.12 3.74 7.39 -52.48 -0.39 3.35 15 11 C 0.04 1.19 5.50 -17.47 -0.10 1.09 15 12 N -0.88 -24.75 13.96 55.50 0.77 -23.98 15 13 Si 0.88 18.63 27.74 -169.99 -4.71 13.91 15 14 H -0.27 -5.60 7.11 56.52 0.40 -5.19 15 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 16 H -0.27 -5.14 6.52 56.52 0.37 -4.77 15 17 C -0.15 -2.16 6.41 -26.75 -0.17 -2.34 15 18 C 0.52 8.27 8.02 -10.86 -0.09 8.18 15 19 O -0.54 -10.20 17.59 5.55 0.10 -10.10 15 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 15 21 H 0.07 0.80 7.92 -51.93 -0.41 0.39 15 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.08 0.94 8.14 -51.92 -0.42 0.52 15 24 H 0.10 1.50 6.96 -51.93 -0.36 1.14 15 25 H 0.37 7.32 5.76 -40.82 -0.24 7.09 15 26 H 0.28 7.19 8.31 -40.82 -0.34 6.85 15 27 H 0.10 1.35 8.14 -51.92 -0.42 0.93 15 28 H 0.11 1.74 7.89 -51.93 -0.41 1.33 15 LS Contribution 246.78 15.07 3.72 3.72 Total: -1.00 -32.31 246.78 -4.05 -36.36 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.09 Total: 7.31 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -0.27 Total: 9.10 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.12 Total: -46.14 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.18 Total: -24.27 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.71 Total: 13.91 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.31 -4.05 -36.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306213786.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.519 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds