Wall clock time and date at job start Sun Mar 29 2020 21:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46766 * 124.34988 * 2 1 4 4 C 1.54480 * 105.47089 * 196.74972 * 3 2 1 5 5 H 1.09003 * 110.96745 * 92.70719 * 4 3 2 6 6 C 1.50699 * 110.96829 * 216.46309 * 4 3 2 7 7 O 1.21300 * 119.99879 * 0.02562 * 6 4 3 8 8 N 1.34774 * 119.99918 * 180.02562 * 6 4 3 9 9 C 1.37097 * 119.99734 * 180.02562 * 8 6 4 10 10 H 1.08005 * 120.00408 * 0.02562 * 9 8 6 11 11 C 1.38950 * 119.99839 * 179.97438 * 9 8 6 12 12 N 1.31412 * 120.00085 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00179 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.46912 * 90.00044 * 13 11 9 15 15 H 1.48502 * 109.47358 * 209.99789 * 13 11 9 16 16 H 1.48497 * 109.47104 * 329.99945 * 13 11 9 17 17 C 1.54618 * 101.76574 * 334.58387 * 4 3 2 18 18 C 1.34413 * 124.34722 * 179.69792 * 2 1 3 19 19 O 1.21284 * 124.94565 * 359.83615 * 18 2 1 20 20 H 1.08999 * 109.47196 * 89.99909 * 1 2 3 21 21 H 1.08997 * 109.47154 * 210.00067 * 1 2 3 22 22 H 1.09002 * 109.47147 * 329.99855 * 1 2 3 23 23 H 1.09008 * 110.24439 * 315.74963 * 3 2 1 24 24 H 1.08998 * 110.24767 * 77.66036 * 3 2 1 25 25 H 0.96993 * 119.99935 * 359.97438 * 8 6 4 26 26 H 0.97004 * 120.00432 * 180.02562 * 12 11 9 27 27 H 1.09008 * 110.48943 * 143.47618 * 17 4 3 28 28 H 1.09000 * 110.48637 * 265.98667 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7027 0.7475 -0.4291 5 1 3.8327 0.8408 -1.5073 6 6 4.7705 1.5131 0.3090 7 8 4.4590 2.3634 1.1160 8 7 6.0715 1.2529 0.0724 9 6 7.0429 1.9490 0.7442 10 1 6.7656 2.7056 1.4634 11 6 8.3843 1.6805 0.5007 12 7 9.3155 2.3473 1.1450 13 14 8.8640 0.3714 -0.7426 14 1 9.0006 0.9906 -2.0855 15 1 10.1583 -0.2385 -0.3448 16 1 7.8147 -0.6784 -0.7859 17 6 3.6898 -0.7378 0.0004 18 6 2.2234 -1.1097 0.0059 19 8 1.7945 -2.2442 0.0147 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9011 1.9365 -0.7137 24 1 2.3255 1.6465 0.9990 25 1 6.3206 0.5727 -0.5726 26 1 10.2519 2.1601 0.9747 27 1 4.2354 -1.3479 -0.7196 28 1 4.1177 -0.8506 0.9965 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306213786.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:22 Heat of formation + Delta-G solvation = -91.919490 kcal Electronic energy + Delta-G solvation = -13993.049612 eV Core-core repulsion = 11429.084569 eV Total energy + Delta-G solvation = -2563.965043 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.70465 -39.99034 -37.35833 -36.03094 -34.10434 -33.45255 -28.80756 -28.14916 -26.66305 -23.72882 -21.18397 -20.66217 -20.09035 -18.28474 -17.74805 -17.06564 -16.55856 -16.24795 -15.69903 -15.26563 -14.72607 -14.64728 -14.54943 -14.29754 -13.77216 -13.34292 -13.15920 -12.97684 -12.44592 -12.42087 -12.26444 -11.96707 -11.52538 -11.09561 -10.45360 -10.26605 -9.74106 -8.41539 -6.03004 1.33290 1.36435 1.45577 1.46326 1.85266 2.01139 2.23777 2.77127 3.12443 3.30500 3.50850 3.93717 3.95961 4.35871 4.38317 4.47397 4.62781 4.69706 4.81910 4.86252 5.01059 5.48278 5.53692 5.94000 5.99960 6.55183 6.85309 7.05575 7.36587 7.89525 8.75330 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.050266 B = 0.008055 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.907618 B = 3475.270538 C = 3876.073553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.618 5.618 3 C 0.122 3.878 4 C -0.104 4.104 5 H 0.144 0.856 6 C 0.463 3.537 7 O -0.618 6.618 8 N -0.580 5.580 9 C -0.330 4.330 10 H 0.061 0.939 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.957 3.043 14 H -0.255 1.255 15 H -0.278 1.278 16 H -0.228 1.228 17 C -0.144 4.144 18 C 0.517 3.483 19 O -0.575 6.575 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.094 0.906 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.391 0.609 26 H 0.280 0.720 27 H 0.131 0.869 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -6.098 -8.287 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.351 5.351 3 C -0.001 4.001 4 C -0.125 4.125 5 H 0.162 0.838 6 C 0.250 3.750 7 O -0.503 6.503 8 N -0.220 5.220 9 C -0.459 4.459 10 H 0.079 0.921 11 C -0.210 4.210 12 N -0.570 5.570 13 Si 0.777 3.223 14 H -0.179 1.179 15 H -0.203 1.203 16 H -0.152 1.152 17 C -0.184 4.184 18 C 0.305 3.695 19 O -0.456 6.456 20 H 0.093 0.907 21 H 0.084 0.916 22 H 0.112 0.888 23 H 0.129 0.871 24 H 0.091 0.909 25 H 0.227 0.773 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.548 -6.044 -7.699 15.914 hybrid contribution 0.841 -0.273 -0.106 0.890 sum -11.707 -6.316 -7.805 15.423 Atomic orbital electron populations 1.21761 0.76314 1.03822 1.03195 1.48356 1.07739 1.06977 1.72069 1.21984 0.87743 0.86595 1.03743 1.22086 0.93390 0.94006 1.03065 0.83781 1.20253 0.83389 0.85807 0.85506 1.90563 1.82184 1.37875 1.39699 1.41995 1.05181 1.35871 1.38934 1.19037 0.86593 1.18613 1.21629 0.92138 1.26077 0.94608 1.00372 0.99928 1.69792 1.01439 1.42702 1.43114 0.85467 0.79581 0.78725 0.78494 1.17948 1.20317 1.15160 1.22384 0.94460 0.95793 1.05777 1.21011 0.89824 0.84121 0.74529 1.90677 1.79371 1.22484 1.53069 0.90749 0.91592 0.88772 0.87083 0.90926 0.77312 0.91088 0.85054 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.97 127.77 1.40 3.03 15 2 N -0.62 -15.15 3.33 -842.89 -2.81 -17.96 15 3 C 0.12 3.05 6.71 86.83 0.58 3.63 15 4 C -0.10 -2.82 3.54 -10.49 -0.04 -2.85 15 5 H 0.14 2.89 8.14 -2.39 -0.02 2.87 15 6 C 0.46 18.91 7.01 87.66 0.61 19.52 15 7 O -0.62 -31.24 15.08 -3.09 -0.05 -31.28 15 8 N -0.58 -25.37 5.09 -306.98 -1.56 -26.93 15 9 C -0.33 -18.33 10.16 84.04 0.85 -17.47 15 10 H 0.06 4.02 7.39 -2.91 -0.02 3.99 15 11 C -0.01 -0.56 5.50 84.93 0.47 -0.09 15 12 N -0.93 -54.38 13.96 21.66 0.30 -54.08 15 13 Si 0.96 37.03 27.74 68.60 1.90 38.93 15 14 H -0.26 -9.31 7.11 99.48 0.71 -8.61 15 15 H -0.28 -10.87 7.11 99.48 0.71 -10.16 15 16 H -0.23 -7.34 6.52 99.48 0.65 -6.69 15 17 C -0.14 -3.80 6.41 30.58 0.20 -3.60 15 18 C 0.52 15.12 8.02 87.90 0.71 15.83 15 19 O -0.58 -20.61 17.59 -3.04 -0.05 -20.66 15 20 H 0.07 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.07 1.31 7.92 -2.39 -0.02 1.30 15 22 H 0.09 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.11 2.14 8.14 -2.38 -0.02 2.13 15 24 H 0.07 2.20 6.96 -2.39 -0.02 2.19 15 25 H 0.39 14.09 5.76 -92.71 -0.53 13.55 15 26 H 0.28 14.97 8.31 -92.71 -0.77 14.20 15 27 H 0.13 2.80 8.14 -2.38 -0.02 2.78 15 28 H 0.10 2.91 7.89 -2.39 -0.02 2.89 15 Total: -1.00 -74.33 246.78 3.10 -71.23 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.58 Total: 22.78 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 4.78 Total: 17.98 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -4.07 Total: -98.97 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.10 Total: -51.95 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 1.90 Total: 38.93 kcal Total: -74.33 3.10 -71.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306213786.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.686 kcal (2) G-P(sol) polarization free energy of solvation -74.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds