Wall clock time and date at job start Sun Mar 29 2020 22:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.45905 * 2 1 4 4 C 1.53038 * 109.44466 * 119.96617 * 2 1 3 5 5 C 1.53192 * 109.31380 * 181.37984 * 4 2 1 6 6 N 1.46931 * 108.77378 * 305.36596 * 5 4 2 7 7 C 1.36938 * 120.63157 * 233.58677 * 6 5 4 8 8 H 1.08005 * 119.99977 * 215.30252 * 7 6 5 9 9 C 1.38810 * 120.00070 * 35.29932 * 7 6 5 10 10 N 1.31622 * 119.99796 * 14.89742 * 9 7 6 11 11 Si 1.86796 * 120.00137 * 194.89600 * 9 7 6 12 12 H 1.48498 * 109.47135 * 60.00174 * 11 9 7 13 13 H 1.48504 * 109.47214 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47464 * 299.99815 * 11 9 7 15 15 C 1.46932 * 118.73913 * 53.60669 * 6 5 4 16 16 H 1.08994 * 109.70293 * 66.24917 * 15 6 5 17 17 C 1.50701 * 109.58295 * 186.60548 * 15 6 5 18 18 N 1.34776 * 119.99548 * 215.98990 * 17 15 6 19 19 O 1.21280 * 120.00267 * 36.27048 * 17 15 6 20 20 C 1.53040 * 109.46248 * 240.02451 * 2 1 3 21 21 H 1.08993 * 109.47313 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47404 * 299.97459 * 1 2 3 23 23 H 1.09004 * 109.47043 * 59.97405 * 1 2 3 24 24 H 1.08996 * 109.49942 * 301.32778 * 4 2 1 25 25 H 1.08999 * 109.50199 * 61.42950 * 4 2 1 26 26 H 1.08996 * 109.58861 * 65.14833 * 5 4 2 27 27 H 1.08996 * 109.59154 * 185.57632 * 5 4 2 28 28 H 0.97001 * 119.99819 * 179.97438 * 10 9 7 29 29 H 0.97000 * 120.00134 * 0.02562 * 18 17 15 30 30 H 0.97007 * 119.99694 * 180.02562 * 18 17 15 31 31 H 1.09000 * 109.49447 * 58.67453 * 20 2 1 32 32 H 1.09004 * 109.52362 * 298.60457 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 3.5710 -0.6890 1.2647 6 7 4.0676 -1.2494 0.0005 7 6 4.9759 -2.2741 0.0006 8 1 5.7386 -2.3198 -0.7627 9 6 4.9164 -3.2542 0.9818 10 7 3.8383 -3.3746 1.7271 11 14 6.3664 -4.4021 1.2445 12 1 7.5683 -3.6073 1.6038 13 1 6.0542 -5.3506 2.3437 14 1 6.6299 -5.1608 -0.0046 15 6 3.5714 -0.6890 -1.2639 16 1 3.9145 0.3401 -1.3695 17 6 4.0834 -1.5132 -2.4171 18 7 4.4148 -0.9146 -3.5783 19 8 4.1925 -2.7156 -2.3019 20 6 2.0399 -0.7209 -1.2499 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5134 0.8901 23 1 -0.3633 0.5143 -0.8898 24 1 1.6569 -0.2207 2.1398 25 1 1.6973 -1.7556 1.2384 26 1 3.9142 0.3404 1.3677 27 1 3.9411 -1.2849 2.0989 28 1 3.7966 -4.0597 2.4126 29 1 4.3240 0.0466 -3.6717 30 1 4.7440 -1.4452 -4.3207 31 1 1.6575 -0.2209 -2.1398 32 1 1.6976 -1.7558 -1.2388 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306229725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:32 Heat of formation + Delta-G solvation = -25.010141 kcal Electronic energy + Delta-G solvation = -15137.661786 eV Core-core repulsion = 12712.431244 eV Total energy + Delta-G solvation = -2425.230541 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.06314 -36.86083 -33.62771 -32.82907 -31.04067 -29.76399 -27.31403 -24.05510 -23.08752 -21.38910 -19.51181 -18.91102 -17.14027 -16.21571 -15.60237 -14.81829 -14.04814 -13.74283 -13.54076 -13.24871 -12.96263 -12.62164 -12.26952 -11.85100 -11.22408 -11.05409 -10.96612 -10.64856 -10.41701 -10.28528 -10.03912 -9.95905 -9.64122 -9.24833 -8.91174 -8.72158 -8.17259 -6.41900 -5.62308 -3.10986 3.50133 3.53604 3.56888 3.60238 4.23923 4.65386 5.45258 5.46683 5.51735 5.61225 5.74311 5.90924 6.05973 6.14662 6.23620 6.32076 6.37249 6.54131 6.62995 6.83866 6.88169 7.02335 7.04832 7.43063 7.59755 7.71619 7.98705 8.05073 8.62461 9.18895 9.34454 9.92162 10.49909 11.45170 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.014586 C = 0.010434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.736787 B = 1919.247313 C = 2682.888327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.056 0.944 4 C -0.122 4.122 5 C 0.168 3.832 6 N -0.574 5.574 7 C -0.226 4.226 8 H 0.062 0.938 9 C 0.009 3.991 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.283 1.283 15 C 0.153 3.847 16 H 0.040 0.960 17 C 0.510 3.490 18 N -0.873 5.873 19 O -0.497 6.497 20 C -0.115 4.115 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.000 1.000 27 H 0.094 0.906 28 H 0.251 0.749 29 H 0.392 0.608 30 H 0.389 0.611 31 H 0.045 0.955 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 8.596 -5.508 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.075 0.925 4 C -0.161 4.161 5 C 0.043 3.957 6 N -0.299 5.299 7 C -0.355 4.355 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.544 5.544 11 Si 0.731 3.269 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.209 1.209 15 C 0.043 3.957 16 H 0.058 0.942 17 C 0.294 3.706 18 N -0.440 5.440 19 O -0.367 6.367 20 C -0.155 4.155 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.018 0.982 27 H 0.112 0.888 28 H 0.061 0.939 29 H 0.219 0.781 30 H 0.219 0.781 31 H 0.063 0.937 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.358 7.647 -5.078 9.775 hybrid contribution 0.663 -0.442 -0.327 0.861 sum -2.695 7.205 -5.406 9.402 Atomic orbital electron populations 1.21829 0.96464 1.01368 1.00338 1.21027 0.94183 0.98651 0.96461 0.92513 1.21976 0.99026 1.00959 0.94152 1.20838 0.90823 0.93965 0.90114 1.44100 1.48664 1.39286 0.97860 1.18955 1.04083 1.00720 1.11786 0.92034 1.25105 0.96605 0.96372 1.00883 1.69966 1.25842 1.34602 1.23953 0.86391 0.82486 0.80724 0.77268 1.21250 1.21803 1.20909 1.20577 0.92780 0.94681 0.87641 0.94229 1.20869 0.77100 0.89085 0.83533 1.44104 1.72187 1.11654 1.16007 1.90775 1.50341 1.14847 1.80771 1.21950 0.95848 1.01224 0.96508 0.92936 0.93294 0.93727 0.94153 0.90484 0.98217 0.88833 0.93936 0.78143 0.78150 0.93679 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.19 37.16 0.34 -1.81 16 2 C -0.08 -1.51 2.68 -90.58 -0.24 -1.75 16 3 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.12 -2.57 5.36 -26.61 -0.14 -2.71 16 5 C 0.17 3.99 5.65 -3.71 -0.02 3.97 16 6 N -0.57 -14.65 2.95 -166.09 -0.49 -15.14 16 7 C -0.23 -6.49 7.25 -15.06 -0.11 -6.59 16 8 H 0.06 1.84 6.69 -52.48 -0.35 1.48 16 9 C 0.01 0.26 4.96 -17.43 -0.09 0.17 16 10 N -0.90 -26.60 11.24 55.49 0.62 -25.98 16 11 Si 0.90 23.20 29.58 -169.99 -5.03 18.17 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 15 C 0.15 3.24 3.28 -68.75 -0.23 3.02 16 16 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 17 C 0.51 10.86 6.41 -10.99 -0.07 10.79 16 18 N -0.87 -13.09 8.87 31.22 0.28 -12.81 16 19 O -0.50 -13.22 15.07 5.56 0.08 -13.14 16 20 C -0.12 -2.22 4.63 -26.61 -0.12 -2.34 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.89 8.05 -51.93 -0.42 1.47 16 26 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.09 2.51 5.87 -51.93 -0.30 2.20 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.39 4.46 8.80 -40.82 -0.36 4.10 16 30 H 0.39 5.22 8.93 -40.82 -0.36 4.86 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 258.33 15.07 3.89 3.89 Total: -1.00 -33.08 258.33 -6.06 -39.13 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.73 Total: 3.15 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.68 Total: 2.73 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.41 Total: -53.93 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.03 Total: 18.17 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.08 -6.06 -39.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306229725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.123 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds