Wall clock time and date at job start Sun Mar 29 2020 22:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.45905 * 2 1 4 4 C 1.53038 * 109.44466 * 119.96617 * 2 1 3 5 5 C 1.53192 * 109.31380 * 181.37984 * 4 2 1 6 6 N 1.46931 * 108.77378 * 305.36596 * 5 4 2 7 7 C 1.36938 * 120.63157 * 233.58677 * 6 5 4 8 8 H 1.08005 * 119.99977 * 215.30252 * 7 6 5 9 9 C 1.38810 * 120.00070 * 35.29932 * 7 6 5 10 10 N 1.31622 * 119.99796 * 14.89742 * 9 7 6 11 11 Si 1.86796 * 120.00137 * 194.89600 * 9 7 6 12 12 H 1.48498 * 109.47135 * 60.00174 * 11 9 7 13 13 H 1.48504 * 109.47214 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47464 * 299.99815 * 11 9 7 15 15 C 1.46932 * 118.73913 * 53.60669 * 6 5 4 16 16 H 1.08994 * 109.70293 * 66.24917 * 15 6 5 17 17 C 1.50701 * 109.58295 * 186.60548 * 15 6 5 18 18 N 1.34776 * 119.99548 * 215.98990 * 17 15 6 19 19 O 1.21280 * 120.00267 * 36.27048 * 17 15 6 20 20 C 1.53040 * 109.46248 * 240.02451 * 2 1 3 21 21 H 1.08993 * 109.47313 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47404 * 299.97459 * 1 2 3 23 23 H 1.09004 * 109.47043 * 59.97405 * 1 2 3 24 24 H 1.08996 * 109.49942 * 301.32778 * 4 2 1 25 25 H 1.08999 * 109.50199 * 61.42950 * 4 2 1 26 26 H 1.08996 * 109.58861 * 65.14833 * 5 4 2 27 27 H 1.08996 * 109.59154 * 185.57632 * 5 4 2 28 28 H 0.97001 * 119.99819 * 179.97438 * 10 9 7 29 29 H 0.97000 * 120.00134 * 0.02562 * 18 17 15 30 30 H 0.97007 * 119.99694 * 180.02562 * 18 17 15 31 31 H 1.09000 * 109.49447 * 58.67453 * 20 2 1 32 32 H 1.09004 * 109.52362 * 298.60457 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 3.5710 -0.6890 1.2647 6 7 4.0676 -1.2494 0.0005 7 6 4.9759 -2.2741 0.0006 8 1 5.7386 -2.3198 -0.7627 9 6 4.9164 -3.2542 0.9818 10 7 3.8383 -3.3746 1.7271 11 14 6.3664 -4.4021 1.2445 12 1 7.5683 -3.6073 1.6038 13 1 6.0542 -5.3506 2.3437 14 1 6.6299 -5.1608 -0.0046 15 6 3.5714 -0.6890 -1.2639 16 1 3.9145 0.3401 -1.3695 17 6 4.0834 -1.5132 -2.4171 18 7 4.4148 -0.9146 -3.5783 19 8 4.1925 -2.7156 -2.3019 20 6 2.0399 -0.7209 -1.2499 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5134 0.8901 23 1 -0.3633 0.5143 -0.8898 24 1 1.6569 -0.2207 2.1398 25 1 1.6973 -1.7556 1.2384 26 1 3.9142 0.3404 1.3677 27 1 3.9411 -1.2849 2.0989 28 1 3.7966 -4.0597 2.4126 29 1 4.3240 0.0466 -3.6717 30 1 4.7440 -1.4452 -4.3207 31 1 1.6575 -0.2209 -2.1398 32 1 1.6976 -1.7558 -1.2388 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306229725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:31 Heat of formation + Delta-G solvation = -50.518091 kcal Electronic energy + Delta-G solvation = -15138.767893 eV Core-core repulsion = 12712.431244 eV Total energy + Delta-G solvation = -2426.336649 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76018 -38.52667 -35.45455 -34.40853 -32.92170 -31.50960 -28.99841 -25.85324 -24.82067 -23.12781 -21.08289 -20.58482 -18.96145 -17.84085 -17.30430 -16.71635 -15.83748 -15.51836 -15.18149 -14.92437 -14.62891 -14.18660 -14.03049 -13.49253 -13.02035 -12.75795 -12.70925 -12.51802 -12.21016 -12.13975 -11.82885 -11.69247 -11.34602 -10.97396 -10.53530 -10.42846 -10.18464 -8.43181 -7.76972 -5.27151 1.41773 1.45722 1.50523 1.90725 2.56157 2.79500 3.38692 3.73525 4.04919 4.14526 4.21005 4.47741 4.53667 4.60856 4.84221 4.88870 4.99327 5.00012 5.19026 5.23694 5.30079 5.44924 5.53982 5.70601 5.76395 5.95175 6.11539 6.49006 6.72758 7.26352 7.66112 7.88537 8.40417 9.26601 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.014586 C = 0.010434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.736787 B = 1919.247313 C = 2682.888327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.114 4.114 5 C 0.164 3.836 6 N -0.594 5.594 7 C -0.221 4.221 8 H 0.046 0.954 9 C -0.046 4.046 10 N -0.923 5.923 11 Si 0.952 3.048 12 H -0.274 1.274 13 H -0.291 1.291 14 H -0.293 1.293 15 C 0.143 3.857 16 H 0.078 0.922 17 C 0.507 3.493 18 N -0.841 5.841 19 O -0.563 6.563 20 C -0.108 4.108 21 H 0.034 0.966 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.024 0.976 27 H 0.056 0.944 28 H 0.244 0.756 29 H 0.415 0.585 30 H 0.402 0.598 31 H 0.086 0.914 32 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 11.148 -6.739 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.102 0.898 4 C -0.153 4.153 5 C 0.039 3.961 6 N -0.319 5.319 7 C -0.352 4.352 8 H 0.063 0.937 9 C -0.242 4.242 10 N -0.569 5.569 11 Si 0.782 3.218 12 H -0.200 1.200 13 H -0.217 1.217 14 H -0.220 1.220 15 C 0.034 3.966 16 H 0.095 0.905 17 C 0.292 3.708 18 N -0.407 5.407 19 O -0.439 6.439 20 C -0.148 4.148 21 H 0.053 0.947 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.246 0.754 30 H 0.232 0.768 31 H 0.105 0.895 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.779 10.280 -6.359 12.664 hybrid contribution 0.807 -1.121 -0.057 1.383 sum -2.972 9.159 -6.416 11.570 Atomic orbital electron populations 1.21765 0.94144 1.00940 1.02527 1.21022 0.96104 0.99034 0.93662 0.89794 1.21816 0.97160 0.99100 0.97179 1.20812 0.92587 0.94084 0.88567 1.44236 1.48952 1.38811 0.99945 1.18958 1.04468 1.01105 1.10682 0.93654 1.25720 0.98755 0.98108 1.01574 1.70112 1.27058 1.35174 1.24531 0.85583 0.80595 0.79183 0.76456 1.20016 1.21663 1.22001 1.20874 0.94172 0.95779 0.85751 0.90462 1.21016 0.76562 0.88294 0.84944 1.43685 1.69703 1.12999 1.14334 1.90756 1.53439 1.17481 1.82219 1.21882 0.94348 0.99365 0.99187 0.94727 0.91687 0.90978 0.92130 0.94992 0.95850 0.92590 0.94676 0.75412 0.76754 0.89509 0.95803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.19 71.98 0.66 -3.00 16 2 C -0.08 -2.60 2.68 -10.77 -0.03 -2.63 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C -0.11 -4.70 5.36 30.67 0.16 -4.54 16 5 C 0.16 7.78 5.65 86.36 0.49 8.27 16 6 N -0.59 -30.25 2.95 -679.38 -2.00 -32.25 16 7 C -0.22 -12.97 7.25 84.03 0.61 -12.36 16 8 H 0.05 2.77 6.69 -2.91 -0.02 2.75 16 9 C -0.05 -2.77 4.96 84.86 0.42 -2.35 16 10 N -0.92 -56.75 11.24 21.65 0.24 -56.51 16 11 Si 0.95 49.06 29.58 68.60 2.03 51.09 16 12 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 14 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 15 C 0.14 5.77 3.28 44.23 0.15 5.91 16 16 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 17 C 0.51 20.95 6.41 87.66 0.56 21.51 16 18 N -0.84 -22.63 8.87 -173.53 -1.54 -24.17 16 19 O -0.56 -30.43 15.07 -3.03 -0.05 -30.47 16 20 C -0.11 -3.91 4.63 30.67 0.14 -3.77 16 21 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 24 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.03 1.60 8.05 -2.39 -0.02 1.58 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 27 H 0.06 3.08 5.87 -2.39 -0.01 3.07 16 28 H 0.24 14.71 8.31 -92.71 -0.77 13.93 16 29 H 0.41 7.57 8.80 -92.71 -0.82 6.75 16 30 H 0.40 9.67 8.93 -92.70 -0.83 8.84 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 32 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -75.58 258.33 1.33 -74.26 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -0.52 Total: 11.02 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 3.16 Total: 7.04 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -3.30 Total: -112.94 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal Total: -75.58 1.33 -74.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306229725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.737 kcal (2) G-P(sol) polarization free energy of solvation -75.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds