Wall clock time and date at job start Sun Mar 29 2020 21:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.49622 * 2 1 4 4 C 1.53244 * 109.49686 * 120.05974 * 2 1 3 5 5 N 1.47076 * 108.52136 * 66.12464 * 4 2 1 6 6 C 1.34776 * 120.87970 * 231.16369 * 5 4 2 7 7 O 1.21689 * 119.99898 * 174.76692 * 6 5 4 8 8 C 1.46374 * 120.00374 * 354.76735 * 6 5 4 9 9 H 1.08005 * 119.99536 * 5.00166 * 8 6 5 10 10 C 1.40047 * 120.00245 * 184.99859 * 8 6 5 11 11 N 1.30665 * 119.99735 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99978 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47100 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46924 * 120.00096 * 12 10 8 15 15 H 1.48493 * 109.47181 * 239.99955 * 12 10 8 16 16 C 1.47079 * 118.23563 * 51.18963 * 5 4 2 17 17 C 1.53241 * 108.52337 * 308.81102 * 16 5 4 18 18 N 1.46901 * 109.49207 * 239.92280 * 2 1 3 19 19 H 1.09004 * 109.47031 * 299.94057 * 1 2 3 20 20 H 1.08997 * 109.47519 * 59.94399 * 1 2 3 21 21 H 1.09004 * 109.47314 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47359 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.47427 * 300.05887 * 3 2 1 24 24 H 1.09005 * 109.46601 * 60.05728 * 3 2 1 25 25 H 1.09002 * 109.63034 * 185.83972 * 4 2 1 26 26 H 1.09004 * 109.62139 * 306.41845 * 4 2 1 27 27 H 0.97004 * 119.99699 * 180.02562 * 11 10 8 28 28 H 1.09001 * 109.62414 * 189.10311 * 16 5 4 29 29 H 1.09004 * 109.78775 * 68.61978 * 16 5 4 30 30 H 1.09001 * 109.49334 * 293.87523 * 17 16 5 31 31 H 1.08993 * 109.49287 * 173.79041 * 17 16 5 32 32 H 1.00896 * 111.00160 * 67.29015 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0414 -0.7236 1.2503 5 7 1.6652 -2.1423 1.1557 6 6 1.0291 -2.7584 2.1717 7 8 0.6407 -3.9042 2.0407 8 6 0.8055 -2.0495 3.4326 9 1 1.0771 -1.0080 3.5220 10 6 0.2392 -2.7216 4.5230 11 7 -0.0890 -3.9817 4.4148 12 14 -0.0456 -1.8170 6.1323 13 1 0.4089 -0.4097 5.9963 14 1 -1.4931 -1.8394 6.4633 15 1 0.7205 -2.4824 7.2165 16 6 2.0022 -2.8709 -0.0767 17 6 1.4923 -2.0628 -1.2748 18 7 2.0201 -0.6940 -1.1984 19 1 -0.3633 0.5129 0.8905 20 1 -0.3634 0.5147 -0.8894 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1305 1.4418 -0.0005 23 1 1.6766 1.9566 -0.8894 24 1 1.6782 1.9559 0.8906 25 1 3.1264 -0.6353 1.3063 26 1 1.5890 -0.2832 2.1389 27 1 -0.4816 -4.4472 5.1700 28 1 1.5239 -3.8503 -0.0654 29 1 3.0830 -2.9920 -0.1500 30 1 0.4028 -2.0341 -1.2569 31 1 1.8291 -2.5315 -2.1994 32 1 1.7980 -0.1738 -2.0338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306255016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:59 Heat of formation + Delta-G solvation = -31.990519 kcal Electronic energy + Delta-G solvation = -14973.776794 eV Core-core repulsion = 12548.243561 eV Total energy + Delta-G solvation = -2425.533233 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15623 -36.46271 -33.11408 -32.28927 -32.13997 -27.57563 -26.99788 -25.95518 -24.90550 -22.03867 -19.42249 -18.33727 -16.68954 -15.77058 -15.08267 -14.87872 -14.46234 -14.04321 -13.83682 -13.40785 -12.75301 -12.54161 -11.92324 -11.84960 -11.50356 -11.34403 -11.15444 -11.05748 -10.87817 -10.79153 -10.61929 -10.24087 -10.13790 -9.95092 -8.86569 -8.18511 -7.56584 -7.11493 -6.19504 -4.63877 3.12050 3.20343 3.24333 4.08430 4.42006 4.55553 4.64743 5.18104 5.37115 5.46966 5.64089 5.73711 5.83364 5.88894 5.97517 6.00767 6.12331 6.15924 6.32917 6.35237 6.55253 6.59260 6.63749 6.79917 7.37478 7.46206 7.63568 7.68848 8.15419 8.39312 9.02676 9.46887 10.58393 10.77228 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038201 B = 0.010659 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.783028 B = 2626.215670 C = 3117.360523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 C -0.135 4.135 4 C 0.140 3.860 5 N -0.641 5.641 6 C 0.560 3.440 7 O -0.580 6.580 8 C -0.543 4.543 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.905 3.095 13 H -0.263 1.263 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.124 3.876 17 C 0.042 3.958 18 N -0.677 5.677 19 H 0.061 0.939 20 H 0.041 0.959 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.267 0.733 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 9.073 -7.064 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.002 4.002 3 C -0.193 4.193 4 C 0.015 3.985 5 N -0.379 5.379 6 C 0.366 3.634 7 O -0.463 6.463 8 C -0.580 4.580 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.729 3.271 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.201 1.201 16 C -0.001 4.001 17 C -0.088 4.088 18 N -0.308 5.308 19 H 0.080 0.920 20 H 0.060 0.940 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.759 8.040 -6.729 10.841 hybrid contribution -1.065 0.700 0.436 1.347 sum 1.694 8.740 -6.293 10.902 Atomic orbital electron populations 1.22402 0.96825 1.02826 1.01067 1.21417 0.92835 0.93661 0.92286 1.21767 1.01623 0.94504 1.01445 1.21492 0.98317 0.82843 0.95817 1.48176 1.63501 1.09659 1.16600 1.18248 0.76610 0.85936 0.82612 1.90585 1.54521 1.19205 1.81956 1.21001 1.43700 0.97858 0.95436 0.90980 1.25726 0.93284 0.94484 0.99704 1.70027 1.30181 1.09152 1.30346 0.86360 0.78409 0.80409 0.81877 1.18711 1.20183 1.20134 1.21196 0.98575 0.96177 0.84149 1.22377 0.97717 0.89633 0.99095 1.60563 1.62795 1.03111 1.04328 0.92004 0.93954 0.91550 0.91946 0.93146 0.91977 0.93453 0.89042 0.92181 0.89842 0.93492 0.94601 0.91138 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.05 37.15 0.30 -2.53 16 2 C 0.09 1.43 0.96 -131.48 -0.13 1.30 16 3 C -0.14 -1.71 8.71 37.16 0.32 -1.38 16 4 C 0.14 2.74 5.14 -3.60 -0.02 2.72 16 5 N -0.64 -15.00 2.48 -174.12 -0.43 -15.43 16 6 C 0.56 16.14 7.62 -12.99 -0.10 16.04 16 7 O -0.58 -18.98 14.49 5.20 0.08 -18.90 16 8 C -0.54 -15.30 8.85 -35.63 -0.32 -15.62 16 9 H 0.07 1.86 5.74 -52.48 -0.30 1.56 16 10 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 11 N -0.77 -23.12 11.84 55.55 0.66 -22.46 16 12 Si 0.90 20.11 29.56 -169.99 -5.02 15.08 16 13 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 16 C 0.12 2.54 6.61 -3.60 -0.02 2.51 16 17 C 0.04 0.69 6.33 -3.70 -0.02 0.67 16 18 N -0.68 -10.22 6.30 -99.70 -0.63 -10.85 16 19 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 1.30 5.92 -51.93 -0.31 0.99 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.09 1.86 5.47 -51.93 -0.28 1.57 16 27 H 0.27 7.28 8.29 -40.82 -0.34 6.95 16 28 H 0.08 1.88 7.04 -51.93 -0.37 1.52 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.63 6.10 -51.93 -0.32 0.32 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.33 4.20 8.77 -39.29 -0.34 3.85 16 LS Contribution 256.25 15.07 3.86 3.86 Total: -1.00 -33.23 256.25 -6.00 -39.24 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.44 Total: 3.40 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.08 Total: 6.06 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.40 Total: -48.74 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.08 Total: -18.90 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.23 -6.00 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306255016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.246 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds