Wall clock time and date at job start Sun Mar 29 2020 22:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.76111 * 2 1 4 4 C 1.55136 * 110.70808 * 236.79810 * 2 1 3 5 5 C 1.54910 * 101.65131 * 205.96410 * 4 2 1 6 6 N 1.47839 * 104.79725 * 37.07211 * 5 4 2 7 7 C 1.46901 * 111.00094 * 213.63685 * 6 5 4 8 8 C 1.50701 * 109.46921 * 290.83999 * 7 6 5 9 9 O 1.21294 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99707 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.38941 * 119.99927 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00180 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46986 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47457 * 119.99901 * 15 13 11 18 18 H 1.48501 * 109.47104 * 239.99973 * 15 13 11 19 19 C 1.47445 * 108.56660 * 335.90202 * 6 5 4 20 20 H 1.09001 * 109.47894 * 296.79848 * 1 2 3 21 21 H 1.09001 * 109.47169 * 56.80696 * 1 2 3 22 22 H 1.09009 * 109.47384 * 176.79985 * 1 2 3 23 23 H 1.08999 * 110.99026 * 324.05487 * 4 2 1 24 24 H 1.08998 * 110.99243 * 87.83089 * 4 2 1 25 25 H 1.08995 * 110.37196 * 278.24067 * 5 4 2 26 26 H 1.09005 * 110.37080 * 155.89665 * 5 4 2 27 27 H 1.09002 * 109.47401 * 170.84027 * 7 6 5 28 28 H 1.09001 * 109.46874 * 50.84040 * 7 6 5 29 29 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 30 30 H 0.97000 * 119.99884 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.88966 * 120.39554 * 19 6 5 32 32 H 1.09004 * 109.88923 * 241.42291 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0786 -0.7946 -1.2142 5 6 3.4651 -1.2465 -0.6918 6 7 3.2489 -1.5501 0.7389 7 6 4.4405 -1.2215 1.5327 8 6 5.5502 -2.1834 1.1946 9 8 5.3667 -3.0565 0.3729 10 7 6.7470 -2.0729 1.8047 11 6 7.7567 -2.9477 1.4967 12 1 7.5930 -3.7256 0.7656 13 6 8.9903 -2.8341 2.1259 14 7 9.1893 -1.8878 3.0159 15 14 10.3663 -4.0255 1.7059 16 1 9.8909 -4.9893 0.6812 17 1 11.5296 -3.2708 1.1744 18 1 10.7722 -4.7639 2.9287 19 6 2.0756 -0.7904 1.2079 20 1 -0.3635 0.4633 0.9173 21 1 -0.3633 0.5626 -0.8600 22 1 -0.3634 -1.0261 -0.0574 23 1 1.4460 -1.6540 -1.4365 24 1 2.1806 -0.1512 -2.0881 25 1 4.1930 -0.4430 -0.8034 26 1 3.7984 -2.1383 -1.2227 27 1 4.2031 -1.2991 2.5937 28 1 4.7594 -0.2043 1.3052 29 1 6.8938 -1.3744 2.4615 30 1 10.0506 -1.8083 3.4549 31 1 1.3131 -1.4762 1.5772 32 1 2.3714 -0.1033 2.0007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307180257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:14 Heat of formation + Delta-G solvation = -39.691213 kcal Electronic energy + Delta-G solvation = -14120.714256 eV Core-core repulsion = 11694.847095 eV Total energy + Delta-G solvation = -2425.867160 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.17378 -37.53932 -33.94218 -32.88388 -31.16478 -29.57747 -27.36008 -25.22391 -23.86509 -20.95714 -20.09518 -19.13425 -17.82568 -16.22790 -15.62893 -14.76220 -14.47518 -14.27857 -13.81777 -13.55860 -13.25467 -12.89441 -12.56376 -12.20881 -11.64373 -11.60724 -11.41472 -11.13572 -10.91905 -10.73285 -10.65502 -10.43017 -10.30624 -10.17955 -9.45788 -8.37100 -7.91733 -7.77048 -6.37184 -3.77710 3.19369 3.29405 3.36981 3.97454 4.12335 4.34400 4.63512 4.84099 4.91205 5.20483 5.29430 5.47374 5.52124 5.53643 5.61237 5.73207 5.86316 5.93115 5.97150 6.02821 6.06505 6.19666 6.35858 6.41744 6.56976 7.37094 7.40020 7.59702 8.11931 8.67760 9.23469 9.60385 10.12888 10.80952 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.082460 B = 0.005997 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.477284 B = 4667.523761 C = 4856.634407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.052 3.948 6 N -0.508 5.508 7 C 0.041 3.959 8 C 0.446 3.554 9 O -0.577 6.577 10 N -0.568 5.568 11 C -0.296 4.296 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.904 5.904 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.045 3.955 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.391 0.609 30 H 0.270 0.730 31 H 0.076 0.924 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 5.918 -3.053 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.136 4.136 3 H 0.090 0.910 4 C -0.165 4.165 5 C -0.075 4.075 6 N -0.232 5.232 7 C -0.091 4.091 8 C 0.231 3.769 9 O -0.460 6.460 10 N -0.205 5.205 11 C -0.426 4.426 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.546 5.546 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.083 4.083 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.224 0.776 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.105 4.821 -3.430 13.474 hybrid contribution 1.098 0.838 0.319 1.418 sum -11.007 5.660 -3.110 12.762 Atomic orbital electron populations 1.21717 0.94536 1.01975 1.01343 1.22387 0.96113 0.99141 0.95969 0.90975 1.22835 0.97092 0.99581 0.96959 1.23020 0.95282 1.00578 0.88639 1.63238 1.02637 1.54630 1.02651 1.22110 0.91252 0.97089 0.98646 1.19783 0.83599 0.87867 0.85666 1.90502 1.81864 1.37219 1.36432 1.41875 1.10074 1.30527 1.38048 1.19749 0.90058 1.10593 1.22187 0.87914 1.25246 0.98732 0.97796 0.96269 1.69626 1.25115 1.32729 1.27108 0.85807 0.80302 0.79921 0.78358 1.19242 1.20823 1.20784 1.22957 0.93712 0.95325 0.96341 0.92768 0.92827 0.92316 0.90737 0.91319 0.94237 0.88984 0.89525 0.93501 0.77558 0.92010 0.90619 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.13 37.16 0.34 -0.96 16 2 C -0.12 -1.36 3.54 -88.80 -0.31 -1.67 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.62 6.52 -24.59 -0.16 -1.78 16 5 C 0.05 0.89 5.74 -2.30 -0.01 0.87 16 6 N -0.51 -9.07 4.86 -232.69 -1.13 -10.20 16 7 C 0.04 0.77 5.05 -4.97 -0.03 0.75 16 8 C 0.45 10.94 7.58 -10.98 -0.08 10.86 16 9 O -0.58 -16.10 14.61 5.55 0.08 -16.02 16 10 N -0.57 -14.83 5.29 -10.96 -0.06 -14.88 16 11 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 12 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 13 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -25.04 13.05 55.50 0.72 -24.31 16 15 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.04 0.61 6.46 -2.83 -0.02 0.60 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.56 8.11 -51.92 -0.42 0.14 16 23 H 0.07 0.94 8.02 -51.93 -0.42 0.53 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.68 7.62 -51.93 -0.40 0.28 16 26 H 0.09 1.80 7.38 -51.93 -0.38 1.42 16 27 H 0.09 1.49 8.03 -51.93 -0.42 1.08 16 28 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 29 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.08 1.00 7.82 -51.93 -0.41 0.60 16 32 H 0.05 0.65 7.55 -51.93 -0.39 0.26 16 LS Contribution 266.20 15.07 4.01 4.01 Total: -1.00 -31.20 266.20 -6.67 -37.88 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.76 Total: 6.62 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.52 Total: 0.54 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.47 Total: -49.39 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.20 -6.67 -37.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307180257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.813 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds