Wall clock time and date at job start Sun Mar 29 2020 22:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.76111 * 2 1 4 4 C 1.55136 * 110.70808 * 236.79810 * 2 1 3 5 5 C 1.54910 * 101.65131 * 205.96410 * 4 2 1 6 6 N 1.47839 * 104.79725 * 37.07211 * 5 4 2 7 7 C 1.46901 * 111.00094 * 213.63685 * 6 5 4 8 8 C 1.50701 * 109.46921 * 290.83999 * 7 6 5 9 9 O 1.21294 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99707 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.38941 * 119.99927 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00180 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46986 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47457 * 119.99901 * 15 13 11 18 18 H 1.48501 * 109.47104 * 239.99973 * 15 13 11 19 19 C 1.47445 * 108.56660 * 335.90202 * 6 5 4 20 20 H 1.09001 * 109.47894 * 296.79848 * 1 2 3 21 21 H 1.09001 * 109.47169 * 56.80696 * 1 2 3 22 22 H 1.09009 * 109.47384 * 176.79985 * 1 2 3 23 23 H 1.08999 * 110.99026 * 324.05487 * 4 2 1 24 24 H 1.08998 * 110.99243 * 87.83089 * 4 2 1 25 25 H 1.08995 * 110.37196 * 278.24067 * 5 4 2 26 26 H 1.09005 * 110.37080 * 155.89665 * 5 4 2 27 27 H 1.09002 * 109.47401 * 170.84027 * 7 6 5 28 28 H 1.09001 * 109.46874 * 50.84040 * 7 6 5 29 29 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 30 30 H 0.97000 * 119.99884 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.88966 * 120.39554 * 19 6 5 32 32 H 1.09004 * 109.88923 * 241.42291 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0786 -0.7946 -1.2142 5 6 3.4651 -1.2465 -0.6918 6 7 3.2489 -1.5501 0.7389 7 6 4.4405 -1.2215 1.5327 8 6 5.5502 -2.1834 1.1946 9 8 5.3667 -3.0565 0.3729 10 7 6.7470 -2.0729 1.8047 11 6 7.7567 -2.9477 1.4967 12 1 7.5930 -3.7256 0.7656 13 6 8.9903 -2.8341 2.1259 14 7 9.1893 -1.8878 3.0159 15 14 10.3663 -4.0255 1.7059 16 1 9.8909 -4.9893 0.6812 17 1 11.5296 -3.2708 1.1744 18 1 10.7722 -4.7639 2.9287 19 6 2.0756 -0.7904 1.2079 20 1 -0.3635 0.4633 0.9173 21 1 -0.3633 0.5626 -0.8600 22 1 -0.3634 -1.0261 -0.0574 23 1 1.4460 -1.6540 -1.4365 24 1 2.1806 -0.1512 -2.0881 25 1 4.1930 -0.4430 -0.8034 26 1 3.7984 -2.1383 -1.2227 27 1 4.2031 -1.2991 2.5937 28 1 4.7594 -0.2043 1.3052 29 1 6.8938 -1.3744 2.4615 30 1 10.0506 -1.8083 3.4549 31 1 1.3131 -1.4762 1.5772 32 1 2.3714 -0.1033 2.0007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307180257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:13 Heat of formation + Delta-G solvation = -62.462475 kcal Electronic energy + Delta-G solvation = -14121.701692 eV Core-core repulsion = 11694.847095 eV Total energy + Delta-G solvation = -2426.854596 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65761 -39.22629 -35.97505 -34.15189 -33.23900 -30.74613 -28.82105 -26.76809 -25.37903 -22.29076 -21.10324 -20.98323 -19.89152 -17.90540 -17.06953 -16.47074 -16.08724 -15.91343 -15.58461 -14.74319 -14.56139 -14.27561 -13.82551 -13.56384 -13.51836 -13.00618 -12.82642 -12.58244 -12.41560 -12.27984 -12.11038 -11.77797 -11.60644 -11.53673 -11.43177 -10.30564 -10.01324 -9.17700 -8.47039 -5.95963 1.36277 1.41139 1.55763 2.04864 2.28720 2.85650 3.19358 3.39679 3.70572 3.79698 3.99550 4.30262 4.34562 4.38679 4.49793 4.59343 4.63999 4.70033 4.89246 4.95931 5.07572 5.13072 5.23326 5.31930 5.40487 5.50701 5.90443 6.06405 6.18432 6.60796 7.12740 7.55792 8.12165 8.70854 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.082460 B = 0.005997 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.477284 B = 4667.523761 C = 4856.634407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.117 4.117 5 C 0.049 3.951 6 N -0.533 5.533 7 C 0.054 3.946 8 C 0.440 3.560 9 O -0.617 6.617 10 N -0.576 5.576 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.922 5.922 15 Si 0.994 3.006 16 H -0.274 1.274 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.042 3.958 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.396 0.604 30 H 0.278 0.722 31 H 0.080 0.920 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 7.004 -2.695 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.079 4.079 6 N -0.258 5.258 7 C -0.078 4.078 8 C 0.227 3.773 9 O -0.502 6.502 10 N -0.213 5.213 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.818 3.182 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.085 4.085 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.093 0.907 24 H 0.106 0.894 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.873 5.937 -3.052 14.500 hybrid contribution 1.308 0.495 0.210 1.415 sum -11.564 6.432 -2.841 13.534 Atomic orbital electron populations 1.21683 0.92511 1.02230 1.02656 1.22372 0.97667 0.98879 0.93834 0.89983 1.22797 0.94345 1.00139 0.98242 1.22936 0.97735 0.98685 0.88506 1.63138 1.03223 1.56547 1.02903 1.21973 0.89858 0.96011 0.99934 1.20832 0.84197 0.87976 0.84269 1.90474 1.82652 1.39160 1.37960 1.41943 1.10421 1.30477 1.38506 1.19695 0.91801 1.11518 1.23223 0.90468 1.26043 1.00329 0.99234 0.95648 1.69683 1.26049 1.33418 1.27152 0.84857 0.77333 0.77763 0.78283 1.19886 1.19482 1.19507 1.23067 0.92084 0.95691 0.97676 0.91526 0.91476 0.92627 0.90725 0.89373 0.94847 0.92830 0.87443 0.91547 0.77052 0.91287 0.90143 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.13 71.98 0.66 -1.39 16 2 C -0.11 -2.21 3.54 -9.61 -0.03 -2.24 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.12 -2.82 6.52 31.98 0.21 -2.61 16 5 C 0.05 1.67 5.74 86.78 0.50 2.17 16 6 N -0.53 -18.70 4.86 -890.08 -4.33 -23.03 16 7 C 0.05 2.00 5.05 85.56 0.43 2.43 16 8 C 0.44 22.08 7.58 87.66 0.66 22.74 16 9 O -0.62 -35.80 14.61 -3.07 -0.04 -35.84 16 10 N -0.58 -30.68 5.29 -306.98 -1.62 -32.31 16 11 C -0.33 -19.45 9.68 84.04 0.81 -18.64 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 14 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 15 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 C 0.04 1.05 6.46 86.65 0.56 1.61 16 20 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.05 0.90 8.11 -2.38 -0.02 0.88 16 23 H 0.07 1.79 8.02 -2.39 -0.02 1.77 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.03 1.15 7.62 -2.39 -0.02 1.13 16 26 H 0.05 2.20 7.38 -2.38 -0.02 2.18 16 27 H 0.11 3.53 8.03 -2.39 -0.02 3.51 16 28 H 0.07 2.22 7.85 -2.39 -0.02 2.20 16 29 H 0.40 19.96 7.90 -92.71 -0.73 19.23 16 30 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.08 1.95 7.82 -2.39 -0.02 1.93 16 32 H 0.07 1.48 7.55 -2.38 -0.02 1.46 16 Total: -1.00 -68.09 266.20 0.95 -67.14 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.37 Total: 24.79 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.27 Total: 3.83 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -5.67 Total: -105.68 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.04 Total: -35.84 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.09 0.95 -67.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307180257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.681 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds