Wall clock time and date at job start Sun Mar 29 2020 22:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.28988 * 2 1 4 4 C 1.54262 * 110.32294 * 122.12936 * 2 1 3 5 5 C 1.54376 * 105.06300 * 118.89443 * 4 2 1 6 6 N 1.48561 * 104.59265 * 23.85255 * 5 4 2 7 7 C 1.46907 * 110.99887 * 200.96087 * 6 5 4 8 8 C 1.50700 * 109.47016 * 176.49116 * 7 6 5 9 9 O 1.21292 * 120.00076 * 6.06137 * 8 7 6 10 10 N 1.34777 * 119.99856 * 186.05855 * 8 7 6 11 11 C 1.37087 * 120.00305 * 180.02562 * 10 8 7 12 12 H 1.08009 * 119.99996 * 359.97438 * 11 10 8 13 13 C 1.38948 * 120.00575 * 180.02562 * 11 10 8 14 14 N 1.31405 * 119.99782 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00383 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47256 * 89.99964 * 15 13 11 17 17 H 1.48500 * 109.46978 * 210.00250 * 15 13 11 18 18 H 1.48501 * 109.46964 * 329.99863 * 15 13 11 19 19 C 1.48556 * 104.22505 * 320.51481 * 6 5 4 20 20 H 1.08997 * 109.46670 * 299.32681 * 1 2 3 21 21 H 1.08997 * 109.47012 * 179.32589 * 1 2 3 22 22 H 1.08996 * 109.46781 * 59.32825 * 1 2 3 23 23 H 1.09005 * 110.32281 * 237.78982 * 4 2 1 24 24 H 1.09000 * 110.32506 * 359.97438 * 4 2 1 25 25 H 1.09005 * 110.41428 * 142.62735 * 5 4 2 26 26 H 1.09001 * 110.41357 * 264.95445 * 5 4 2 27 27 H 1.09006 * 109.46878 * 296.49205 * 7 6 5 28 28 H 1.09002 * 109.46946 * 56.48889 * 7 6 5 29 29 H 0.97006 * 119.99766 * 359.97438 * 10 8 7 30 30 H 0.97002 * 120.00514 * 179.97438 * 14 13 11 31 31 H 1.08998 * 110.41448 * 280.70891 * 19 6 5 32 32 H 1.08994 * 110.41617 * 158.26395 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0658 -0.7693 1.2250 5 6 2.8806 -1.9416 0.6377 6 7 3.2693 -1.4836 -0.7210 7 6 3.6068 -2.6233 -1.5843 8 6 3.9116 -2.1276 -2.9744 9 8 3.9615 -0.9361 -3.1961 10 7 4.1289 -3.0081 -3.9714 11 6 4.4068 -2.5573 -5.2358 12 1 4.4511 -1.4963 -5.4332 13 6 4.6303 -3.4651 -6.2637 14 7 4.5749 -4.7559 -6.0239 15 14 5.0096 -2.8506 -7.9865 16 1 6.4775 -2.6908 -8.1431 17 1 4.5093 -3.8313 -8.9831 18 1 4.3432 -1.5413 -8.2030 19 6 2.0663 -0.7723 -1.2246 20 1 -0.3632 0.5033 0.8960 21 1 -0.3633 -1.0276 -0.0121 22 1 -0.3633 0.5242 -0.8839 23 1 2.7082 -0.1251 1.8254 24 1 1.2388 -1.1466 1.8266 25 1 3.7671 -2.1297 1.2435 26 1 2.2654 -2.8393 0.5766 27 1 4.4798 -3.1376 -1.1824 28 1 2.7637 -3.3132 -1.6213 29 1 4.0895 -3.9610 -3.7939 30 1 4.7305 -5.3897 -6.7415 31 1 1.3229 -1.4863 -1.5789 32 1 2.3394 -0.0799 -2.0208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307180258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:17 Heat of formation + Delta-G solvation = -39.511998 kcal Electronic energy + Delta-G solvation = -14202.621673 eV Core-core repulsion = 11776.762284 eV Total energy + Delta-G solvation = -2425.859389 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.16129 -37.52276 -33.96375 -32.94688 -31.18233 -29.50250 -27.19068 -25.34176 -23.90171 -21.03625 -19.82271 -19.09169 -17.81507 -16.16951 -15.46941 -15.14884 -14.60799 -14.39927 -13.73819 -13.52475 -12.95750 -12.90059 -12.33375 -12.21368 -11.73310 -11.70460 -11.42377 -11.16000 -10.88748 -10.62845 -10.50101 -10.37400 -10.30215 -10.19498 -9.45817 -8.39666 -7.98704 -7.89067 -6.39418 -3.80073 3.19542 3.27814 3.33757 3.94144 4.12269 4.34524 4.79962 4.82622 5.02743 5.24518 5.29087 5.37558 5.54415 5.65473 5.71178 5.81155 5.88189 5.95107 6.02076 6.05970 6.15699 6.19569 6.32682 6.46467 6.65575 7.25579 7.34161 7.57352 8.08941 8.64780 9.20650 9.57244 10.09466 10.78512 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059786 B = 0.006481 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.225224 B = 4319.414348 C = 4529.633530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.077 0.923 4 C -0.118 4.118 5 C 0.028 3.972 6 N -0.488 5.488 7 C 0.034 3.966 8 C 0.444 3.556 9 O -0.578 6.578 10 N -0.565 5.565 11 C -0.298 4.298 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.041 3.959 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.392 0.608 30 H 0.271 0.729 31 H 0.036 0.964 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 2.692 11.159 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.156 4.156 5 C -0.100 4.100 6 N -0.212 5.212 7 C -0.097 4.097 8 C 0.229 3.771 9 O -0.462 6.462 10 N -0.202 5.202 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 C -0.087 4.087 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.225 0.775 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.361 3.669 10.867 12.661 hybrid contribution -0.464 -1.113 -0.830 1.464 sum -5.825 2.555 10.037 11.883 Atomic orbital electron populations 1.21849 0.95106 1.01543 1.01494 1.21928 0.95041 1.00075 0.94878 0.90431 1.22360 0.98959 0.96979 0.97339 1.23157 0.98663 0.96439 0.91750 1.65179 1.33697 1.21483 1.00827 1.22070 1.01063 0.92669 0.93937 1.19733 0.84544 0.87163 0.85641 1.90490 1.56441 1.15893 1.83397 1.41867 1.61884 1.08400 1.08030 1.19702 1.44472 0.94594 0.84020 0.87931 1.25256 0.97523 0.94930 1.00266 1.69612 1.49951 1.00795 1.34082 0.85856 0.78688 0.78478 0.81256 1.20392 1.20961 1.19439 1.23268 0.90113 0.97853 0.97467 0.92825 0.92921 0.92520 0.91306 0.91625 0.90448 0.94276 0.89221 0.93537 0.77505 0.91905 0.94593 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.91 37.16 0.33 -1.27 16 2 C -0.10 -1.35 3.65 -89.23 -0.33 -1.68 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.12 -1.42 6.65 -25.35 -0.17 -1.59 16 5 C 0.03 0.39 6.49 -2.18 -0.01 0.37 16 6 N -0.49 -8.78 5.18 -231.40 -1.20 -9.98 16 7 C 0.03 0.65 5.39 -4.97 -0.03 0.63 16 8 C 0.44 10.84 7.43 -10.99 -0.08 10.75 16 9 O -0.58 -15.99 14.01 5.55 0.08 -15.91 16 10 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 11 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 12 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 15 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.04 0.71 5.12 -2.18 -0.01 0.70 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.67 7.71 -51.93 -0.40 0.27 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.51 7.92 -51.93 -0.41 0.10 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 28 H 0.05 0.81 7.98 -51.93 -0.41 0.40 16 29 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 32 H 0.10 2.11 6.53 -51.93 -0.34 1.77 16 LS Contribution 265.37 15.07 4.00 4.00 Total: -1.00 -30.82 265.37 -6.77 -37.60 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.75 Total: 7.11 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.54 Total: -0.19 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.53 Total: -48.87 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.08 Total: -15.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.82 -6.77 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307180258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.916 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds