Wall clock time and date at job start Sun Mar 29 2020 22:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99788 * 2 1 4 4 O 1.21586 * 120.00263 * 354.80286 * 3 2 1 5 5 N 1.34775 * 119.99585 * 174.79923 * 3 2 1 6 6 C 1.46923 * 120.63669 * 5.22565 * 5 3 2 7 7 C 1.53191 * 108.77634 * 126.36392 * 6 5 3 8 8 C 1.53037 * 109.31166 * 54.64112 * 7 6 5 9 9 C 1.53042 * 109.53810 * 298.62927 * 8 7 6 10 10 H 1.08997 * 109.49745 * 301.41720 * 9 8 7 11 11 C 1.50696 * 109.49870 * 181.35119 * 9 8 7 12 12 H 1.07997 * 120.00026 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99754 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00477 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99706 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47016 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46901 * 120.00003 * 15 13 11 18 18 H 1.48503 * 109.47148 * 239.99568 * 15 13 11 19 19 C 1.46935 * 120.62794 * 184.94361 * 5 3 2 20 20 H 1.09005 * 109.46837 * 60.27480 * 1 2 3 21 21 H 1.08998 * 109.46714 * 180.26916 * 1 2 3 22 22 H 1.08995 * 109.47229 * 300.27259 * 1 2 3 23 23 H 0.97004 * 120.00180 * 179.73320 * 2 1 3 24 24 H 1.08995 * 109.58741 * 246.15652 * 6 5 3 25 25 H 1.09005 * 109.58302 * 6.43633 * 6 5 3 26 26 H 1.09004 * 109.49752 * 174.59106 * 7 6 5 27 27 H 1.09000 * 109.50280 * 294.68820 * 7 6 5 28 28 H 1.08999 * 109.46318 * 58.64907 * 8 7 6 29 29 H 1.09006 * 109.46066 * 178.61513 * 8 7 6 30 30 H 0.96992 * 120.00439 * 179.97438 * 14 13 11 31 31 H 1.09004 * 109.58406 * 353.41979 * 19 5 3 32 32 H 1.08991 * 109.58243 * 113.84674 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5347 2.2181 -0.0954 5 7 3.4825 1.1696 0.1058 6 6 4.2356 -0.0919 0.1070 7 6 5.3152 -0.0227 -0.9777 8 6 6.1758 1.2232 -0.7564 9 6 5.3018 2.4749 -0.8643 10 1 4.8293 2.5051 -1.8461 11 6 6.1560 3.7024 -0.6792 12 1 7.2166 3.6007 -0.5026 13 6 5.5836 4.9555 -0.7353 14 7 4.2920 5.0795 -0.9499 15 14 6.6424 6.4772 -0.5051 16 1 8.0522 6.0695 -0.2781 17 1 6.5615 7.3252 -1.7215 18 1 6.1550 7.2466 0.6679 19 6 4.2225 2.4342 0.2160 20 1 -0.3633 0.5096 -0.8925 21 1 -0.3633 -1.0277 0.0048 22 1 -0.3633 0.5180 0.8875 23 1 1.9501 -0.8401 0.0039 24 1 4.7043 -0.2368 1.0803 25 1 3.5593 -0.9214 -0.1000 26 1 5.9425 -0.9125 -0.9239 27 1 4.8426 0.0311 -1.9585 28 1 6.6283 1.1808 0.2343 29 1 6.9602 1.2618 -1.5124 30 1 3.8892 5.9610 -0.9890 31 1 3.5379 3.2713 0.0784 32 1 4.6900 2.4995 1.1984 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307222883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:24 Heat of formation + Delta-G solvation = -55.342477 kcal Electronic energy + Delta-G solvation = -14747.164373 eV Core-core repulsion = 12320.618522 eV Total energy + Delta-G solvation = -2426.545850 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21378 -38.50173 -35.75032 -35.01886 -33.36590 -31.51965 -28.03779 -26.88323 -25.33771 -23.42944 -21.68798 -20.46220 -19.17774 -18.25239 -17.14365 -16.62155 -16.37936 -15.40701 -15.19352 -15.09976 -14.64414 -14.32333 -14.23637 -13.64933 -13.46384 -13.00176 -12.89729 -12.63384 -12.27355 -12.19543 -11.84879 -11.62394 -11.23636 -10.94790 -10.81449 -10.51788 -10.16372 -9.24197 -8.08964 -6.27103 1.40374 1.41654 1.54123 1.88492 2.24840 2.42767 3.12298 3.22057 4.05887 4.16855 4.28405 4.49873 4.61805 4.68290 4.74663 4.82916 4.86534 4.97114 5.11873 5.27912 5.28742 5.33346 5.56326 5.59965 5.67014 5.90940 6.00193 6.19502 6.37339 6.87076 7.16845 7.43166 7.70950 8.94296 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038086 B = 0.009792 C = 0.008053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.993503 B = 2858.821740 C = 3476.081566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.740 5.740 3 C 0.686 3.314 4 O -0.644 6.644 5 N -0.629 5.629 6 C 0.109 3.891 7 C -0.126 4.126 8 C -0.105 4.105 9 C 0.037 3.963 10 H -0.017 1.017 11 C -0.535 4.535 12 H 0.063 0.937 13 C 0.007 3.993 14 N -0.916 5.916 15 Si 0.959 3.041 16 H -0.259 1.259 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.141 3.859 20 H 0.038 0.962 21 H 0.122 0.878 22 H 0.043 0.957 23 H 0.411 0.589 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.259 0.741 31 H 0.074 0.926 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -14.787 2.757 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.400 5.400 3 C 0.387 3.613 4 O -0.525 6.525 5 N -0.365 5.365 6 C -0.013 4.013 7 C -0.164 4.164 8 C -0.143 4.143 9 C 0.017 3.983 10 H 0.001 0.999 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.193 4.193 14 N -0.555 5.555 15 Si 0.785 3.215 16 H -0.183 1.183 17 H -0.209 1.209 18 H -0.209 1.209 19 C 0.018 3.982 20 H 0.057 0.943 21 H 0.140 0.860 22 H 0.062 0.938 23 H 0.250 0.750 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.947 -13.929 2.695 14.320 hybrid contribution 0.429 1.083 -0.100 1.169 sum -1.518 -12.845 2.594 13.192 Atomic orbital electron populations 1.21514 0.77468 1.04099 1.00767 1.44982 1.08161 1.06338 1.80478 1.16357 0.82331 0.84555 0.78017 1.90883 1.68825 1.33074 1.59758 1.47703 1.03878 1.09185 1.75740 1.21885 0.94524 0.84678 1.00184 1.21915 0.97505 0.98885 0.98139 1.21509 0.97673 0.94194 1.00912 1.18852 0.92785 0.93768 0.92861 0.99909 1.21561 0.94900 0.91466 1.49432 0.91831 1.25950 0.96019 1.02563 0.94728 1.70122 1.11744 1.23832 1.49759 0.85485 0.79399 0.79176 0.77478 1.18259 1.20893 1.20856 1.21492 0.94775 0.84410 0.97550 0.94348 0.86001 0.93838 0.75004 0.90104 0.87856 0.87553 0.93389 0.92276 0.93012 0.93203 0.90789 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 10.71 127.77 1.37 3.87 16 2 N -0.74 -21.29 5.62 -500.19 -2.81 -24.10 16 3 C 0.69 29.42 8.29 179.05 1.49 30.91 16 4 O -0.64 -35.40 15.77 -3.99 -0.06 -35.46 16 5 N -0.63 -26.02 2.98 -837.73 -2.50 -28.52 16 6 C 0.11 3.05 6.39 86.36 0.55 3.60 16 7 C -0.13 -3.70 6.08 30.67 0.19 -3.51 16 8 C -0.11 -4.09 5.11 30.62 0.16 -3.94 16 9 C 0.04 1.90 2.24 -11.61 -0.03 1.88 16 10 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 11 C -0.54 -30.07 8.57 25.60 0.22 -29.85 16 12 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 13 C 0.01 0.38 5.31 84.66 0.45 0.83 16 14 N -0.92 -57.38 11.39 21.45 0.24 -57.13 16 15 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 C 0.14 7.29 5.39 86.22 0.46 7.75 16 20 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 21 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.41 8.29 6.32 -92.71 -0.59 7.70 16 24 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.10 2.00 5.64 -2.38 -0.01 1.98 16 26 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.97 8.14 -2.38 -0.02 1.96 16 30 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.07 4.62 5.10 -2.38 -0.01 4.61 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -77.74 259.23 2.28 -75.46 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.52 Total: 11.10 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 4.86 Total: 11.55 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -5.06 Total: -109.76 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.06 Total: -35.46 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -77.74 2.28 -75.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307222883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.121 kcal (2) G-P(sol) polarization free energy of solvation -77.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds