Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99703 * 2 1 4 4 H 1.48500 * 109.47392 * 269.99865 * 3 2 1 5 5 H 1.48497 * 109.47277 * 30.00262 * 3 2 1 6 6 H 1.48506 * 109.46766 * 150.00234 * 3 2 1 7 7 C 1.37873 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00569 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99679 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99620 * 179.97438 * 10 9 7 12 12 H 1.09001 * 108.56973 * 322.93303 * 11 10 9 13 13 C 1.51780 * 108.61623 * 204.99697 * 11 10 9 14 14 C 1.52987 * 110.84146 * 172.05063 * 13 11 10 15 15 N 1.47137 * 108.71728 * 86.49877 * 14 13 11 16 16 C 1.33373 * 120.39371 * 288.01273 * 15 14 13 17 17 O 1.21276 * 119.89318 * 180.28114 * 16 15 14 18 18 C 1.51419 * 120.21271 * 0.25914 * 16 15 14 19 19 C 1.51793 * 108.50583 * 80.80905 * 11 10 9 20 20 H 0.97002 * 120.00322 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47005 * 59.99611 * 9 7 2 22 22 H 1.09007 * 109.46706 * 299.99750 * 9 7 2 23 23 H 1.00903 * 110.99942 * 303.94860 * 10 9 7 24 24 H 1.09002 * 109.19806 * 292.39064 * 13 11 10 25 25 H 1.08998 * 109.19291 * 51.71674 * 13 11 10 26 26 H 1.09005 * 109.60711 * 206.19194 * 14 13 11 27 27 H 1.09004 * 109.60798 * 326.68365 * 14 13 11 28 28 H 0.97001 * 119.82076 * 107.98908 * 15 14 13 29 29 H 1.08999 * 109.63554 * 311.54345 * 18 16 15 30 30 H 1.08997 * 109.80259 * 191.04011 * 18 16 15 31 31 H 1.09004 * 109.22051 * 308.18018 * 19 11 10 32 32 H 1.08996 * 109.22753 * 67.52383 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 5.4696 -2.6182 -0.0001 12 1 5.8386 -1.8032 -0.6229 13 6 5.9192 -3.9343 -0.6081 14 6 7.4350 -3.9489 -0.8143 15 7 8.0762 -4.4060 0.4286 16 6 8.1084 -3.6148 1.5019 17 8 8.6437 -3.9988 2.5200 18 6 7.4790 -2.2385 1.4530 19 6 5.9574 -2.4013 1.4208 20 1 -0.4851 0.8400 0.0004 21 1 3.8745 -0.6808 0.8904 22 1 3.8752 -0.6797 -0.8895 23 1 3.6254 -3.0955 0.7811 24 1 5.6402 -4.7507 0.0581 25 1 5.4253 -4.0719 -1.5699 26 1 7.6871 -4.6309 -1.6265 27 1 7.7809 -2.9441 -1.0566 28 1 8.4777 -5.2882 0.4681 29 1 7.8103 -1.7159 0.5556 30 1 7.7678 -1.6688 2.3362 31 1 5.4918 -1.5033 1.8270 32 1 5.6753 -3.2586 2.0320 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307333554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = -46.042563 kcal Electronic energy + Delta-G solvation = -14288.253541 eV Core-core repulsion = 11862.110965 eV Total energy + Delta-G solvation = -2426.142576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19639 -37.39997 -35.13434 -32.98841 -31.76676 -30.61316 -27.39065 -24.77037 -23.97954 -21.22070 -20.46228 -19.73185 -17.37344 -16.82353 -16.66552 -15.18866 -14.89161 -14.42373 -14.01372 -13.75754 -13.59008 -13.20551 -12.63165 -12.51951 -12.20511 -11.84414 -11.63449 -11.44598 -10.88835 -10.69645 -10.63358 -10.33013 -9.87068 -9.76444 -9.35226 -9.15322 -8.63272 -7.55406 -6.09806 -4.08219 2.64949 3.25048 3.26961 3.32845 3.33593 4.37689 4.49484 4.62762 4.79358 4.88091 5.20876 5.22365 5.25055 5.38625 5.44394 5.59683 5.74951 5.86619 6.02993 6.08118 6.33824 6.37928 6.71022 6.75022 6.98152 7.19662 7.54708 7.82777 8.20742 8.24394 8.59704 8.98186 9.51717 11.03496 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.051263 B = 0.006960 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.067711 B = 4022.121248 C = 4240.928647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.676 5.676 11 C 0.080 3.920 12 H 0.071 0.929 13 C -0.128 4.128 14 C 0.108 3.892 15 N -0.724 5.724 16 C 0.521 3.479 17 O -0.561 6.561 18 C -0.135 4.135 19 C -0.144 4.144 20 H 0.264 0.736 21 H -0.014 1.014 22 H 0.022 0.978 23 H 0.336 0.664 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.397 0.603 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.159 -5.301 -1.877 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.305 5.305 11 C -0.031 4.031 12 H 0.089 0.911 13 C -0.167 4.167 14 C -0.017 4.017 15 N -0.376 5.376 16 C 0.308 3.692 17 O -0.440 6.440 18 C -0.176 4.176 19 C -0.184 4.184 20 H 0.074 0.926 21 H 0.004 0.996 22 H 0.040 0.960 23 H 0.154 0.846 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.233 0.767 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.095 -5.225 -2.060 16.106 hybrid contribution 0.584 0.920 0.828 1.369 sum 15.679 -4.305 -1.232 16.306 Atomic orbital electron populations 1.69900 1.06185 1.26927 1.50828 1.24916 0.94753 0.98972 0.94706 0.86825 0.80257 0.83865 0.78568 1.20152 1.21197 1.19235 1.21061 0.88986 0.94807 1.50760 0.90329 1.20045 0.96628 0.85033 0.94738 1.60663 1.03619 1.16783 1.49479 1.21259 0.90843 0.97233 0.93731 0.91102 1.21811 0.93743 0.98225 1.02926 1.21831 0.93211 1.01105 0.85529 1.45988 1.59133 1.19348 1.13138 1.20641 0.78215 0.87826 0.82550 1.90726 1.45845 1.76126 1.31302 1.21939 0.97095 0.93859 1.04730 1.22085 0.93071 1.03441 0.99765 0.92608 0.99647 0.96015 0.84590 0.91461 0.89424 0.89478 0.90562 0.76710 0.89334 0.88793 0.90195 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.49 9.87 -34.44 -0.34 -14.83 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 C 0.16 3.77 4.27 -4.97 -0.02 3.75 16 10 N -0.68 -12.93 6.15 -109.30 -0.67 -13.60 16 11 C 0.08 1.17 2.00 -68.95 -0.14 1.03 16 12 H 0.07 1.03 7.52 -51.93 -0.39 0.64 16 13 C -0.13 -1.48 5.29 -27.36 -0.14 -1.63 16 14 C 0.11 0.94 6.46 -3.70 -0.02 0.91 16 15 N -0.72 -7.50 5.27 -59.94 -0.32 -7.81 16 16 C 0.52 7.05 7.06 -11.26 -0.08 6.97 16 17 O -0.56 -9.84 17.92 5.56 0.10 -9.74 16 18 C -0.14 -1.66 5.57 -27.50 -0.15 -1.81 16 19 C -0.14 -2.02 4.90 -27.31 -0.13 -2.15 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H -0.01 -0.32 6.01 -51.93 -0.31 -0.64 16 22 H 0.02 0.51 7.46 -51.93 -0.39 0.12 16 23 H 0.34 6.42 8.50 -39.29 -0.33 6.08 16 24 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.62 6.70 -51.93 -0.35 0.28 16 28 H 0.40 3.59 8.91 -40.82 -0.36 3.22 16 29 H 0.09 0.92 6.77 -51.93 -0.35 0.57 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.23 6.88 -51.93 -0.36 0.88 16 32 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 LS Contribution 257.88 15.07 3.89 3.89 Total: -1.00 -32.40 257.88 -6.56 -38.96 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.53 Total: 4.34 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.13 Total: -5.90 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.22 Total: -48.00 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.10 Total: -9.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.40 -6.56 -38.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307333554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.084 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds