Wall clock time and date at job start Sun Mar 29 2020 21:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48498 * 109.46721 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47442 * 300.00082 * 3 2 1 6 6 H 1.48499 * 109.47006 * 60.00413 * 3 2 1 7 7 C 1.38950 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99963 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99881 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.46618 * 173.78291 * 12 10 9 14 14 C 1.46856 * 110.99780 * 169.43117 * 13 12 10 15 15 C 1.53030 * 109.52287 * 185.83689 * 14 13 12 16 16 C 1.53116 * 109.28074 * 300.81839 * 15 14 13 17 17 C 1.53117 * 109.15924 * 57.65634 * 16 15 14 18 18 C 1.46843 * 111.00143 * 293.63673 * 13 12 10 19 19 H 0.97001 * 119.99410 * 0.02562 * 1 2 3 20 20 H 0.97004 * 119.99867 * 0.02562 * 9 7 2 21 21 H 1.08995 * 109.47099 * 53.78091 * 12 10 9 22 22 H 1.08996 * 109.46971 * 293.78095 * 12 10 9 23 23 H 1.09004 * 109.45731 * 65.81960 * 14 13 12 24 24 H 1.08996 * 109.46090 * 305.85719 * 14 13 12 25 25 H 1.09004 * 109.49888 * 180.87966 * 15 14 13 26 26 H 1.08993 * 109.50873 * 60.76422 * 15 14 13 27 27 H 1.08997 * 109.52496 * 177.55943 * 16 15 14 28 28 H 1.09002 * 109.52800 * 297.75456 * 16 15 14 29 29 H 1.09005 * 109.50536 * 62.28791 * 17 16 15 30 30 H 1.09002 * 109.50775 * 182.40053 * 17 16 15 31 31 H 1.08997 * 109.46316 * 54.14819 * 18 13 12 32 32 H 1.08998 * 109.46717 * 294.18458 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3965 -1.2124 6 1 1.8895 2.3963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0001 12 6 1.2436 -4.8630 -0.0011 13 7 2.1912 -5.9754 -0.1510 14 6 1.5320 -7.2648 0.0934 15 6 2.5750 -8.3844 0.0724 16 6 3.2750 -8.3979 -1.2893 17 6 3.9119 -7.0284 -1.5405 18 6 2.8302 -5.9479 -1.4728 19 1 -0.4849 0.8401 -0.0004 20 1 0.3533 -2.3906 -0.0005 21 1 0.5364 -4.8738 -0.8304 22 1 0.7027 -4.9706 0.9390 23 1 0.7891 -7.4457 -0.6835 24 1 1.0417 -7.2432 1.0666 25 1 2.0832 -9.3429 0.2383 26 1 3.3105 -8.2114 0.8579 27 1 4.0486 -9.1657 -1.2937 28 1 2.5460 -8.6095 -2.0716 29 1 4.6686 -6.8339 -0.7803 30 1 4.3755 -7.0179 -2.5270 31 1 3.2828 -4.9701 -1.6371 32 1 2.0813 -6.1351 -2.2423 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307460783.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:57 Heat of formation + Delta-G solvation = -44.545965 kcal Electronic energy + Delta-G solvation = -14267.687130 eV Core-core repulsion = 11841.609451 eV Total energy + Delta-G solvation = -2426.077678 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.04426 -37.44694 -33.96412 -32.99698 -31.16531 -30.54311 -27.36438 -24.59885 -22.83197 -22.56173 -19.49379 -19.11007 -17.81363 -15.96540 -15.53084 -14.86759 -14.55290 -14.30107 -13.84741 -13.75610 -13.33435 -13.00523 -12.70393 -12.18487 -11.78613 -11.47931 -11.35016 -11.01632 -10.97937 -10.56046 -10.32100 -10.22310 -10.18143 -10.13924 -9.43781 -8.36371 -7.92740 -7.76655 -6.38341 -3.78865 3.18651 3.28840 3.36300 3.96182 4.06925 4.29720 4.94353 5.01016 5.09865 5.18901 5.28974 5.45994 5.61311 5.73229 5.77573 5.78422 5.89965 5.95977 6.06110 6.11977 6.20274 6.29869 6.34729 6.53838 6.61196 7.41024 7.53587 7.58826 8.11002 8.66489 9.22268 9.59223 10.11559 10.79707 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.070466 B = 0.006450 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.260987 B = 4340.266104 C = 4574.556104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.445 3.555 11 O -0.576 6.576 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.114 4.114 18 C 0.055 3.945 19 H 0.270 0.730 20 H 0.392 0.608 21 H 0.045 0.955 22 H 0.088 0.912 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 -12.663 -1.842 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.459 6.459 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.073 4.073 19 H 0.080 0.920 20 H 0.225 0.775 21 H 0.063 0.937 22 H 0.106 0.894 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.611 -12.440 -1.491 12.632 hybrid contribution -1.011 0.789 -0.577 1.407 sum 0.599 -11.651 -2.068 11.848 Atomic orbital electron populations 1.69627 1.05938 1.27961 1.50972 1.25254 0.95625 0.99684 0.97473 0.85805 0.79709 0.81198 0.77663 1.19237 1.20813 1.20780 1.19751 0.93377 0.82241 1.47282 0.87893 1.41895 1.09173 1.04607 1.64731 1.19784 0.88444 0.84549 0.84237 1.90500 1.13679 1.86961 1.54791 1.21849 0.93766 0.91393 1.01538 1.61493 1.30828 1.00936 1.30751 1.22099 0.95226 0.89597 1.00422 1.21558 0.98552 0.97105 0.98040 1.21591 0.99497 0.97578 0.97165 1.21548 0.98388 0.93762 1.01460 1.22172 0.95897 1.01255 0.87936 0.91991 0.77538 0.93735 0.89380 0.95492 0.91019 0.92022 0.91054 0.92258 0.92671 0.90942 0.92058 0.88622 0.96182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.57 -14.66 5.29 -10.96 -0.06 -14.71 16 10 C 0.44 10.78 7.31 -10.98 -0.08 10.70 16 11 O -0.58 -15.87 14.28 5.55 0.08 -15.79 16 12 C 0.05 0.86 5.45 -4.97 -0.03 0.84 16 13 N -0.52 -9.13 4.35 -236.12 -1.03 -10.15 16 14 C 0.05 0.76 5.46 -3.83 -0.02 0.74 16 15 C -0.11 -1.38 6.09 -26.66 -0.16 -1.54 16 16 C -0.12 -1.43 6.00 -26.61 -0.16 -1.59 16 17 C -0.11 -1.62 6.09 -26.65 -0.16 -1.79 16 18 C 0.06 0.95 5.12 -3.84 -0.02 0.93 16 19 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 20 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 21 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 22 H 0.09 1.50 7.98 -51.93 -0.41 1.08 16 23 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.98 6.05 -51.93 -0.31 1.67 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 263.20 15.07 3.97 3.97 Total: -1.00 -30.74 263.20 -6.99 -37.73 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.78 Total: 6.67 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.87 Total: 0.22 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.36 Total: -49.04 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.08 Total: -15.79 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.74 -6.99 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307460783.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.814 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds