Wall clock time and date at job start Sun Mar 29 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 H 1.09008 * 115.56055 * 29.29399 * 3 2 1 5 5 C 1.53000 * 117.49997 * 243.60886 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.49592 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 N 1.46501 * 117.49747 * 252.51859 * 6 5 3 9 9 C 1.34778 * 120.00167 * 223.61209 * 8 6 5 10 10 O 1.21581 * 119.99875 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99851 * 180.02562 * 9 8 6 12 12 C 1.46505 * 119.99844 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47139 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00008 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00022 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99701 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47249 * 90.00513 * 17 15 13 19 19 H 1.48504 * 109.46862 * 209.99918 * 17 15 13 20 20 H 1.48500 * 109.47540 * 329.99996 * 17 15 13 21 21 H 1.09000 * 109.46540 * 60.00014 * 1 2 3 22 22 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47122 * 300.00432 * 1 2 3 24 24 H 1.08999 * 109.47637 * 239.99610 * 2 1 3 25 25 H 1.09004 * 109.47028 * 119.99895 * 2 1 3 26 26 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 27 27 H 1.09002 * 117.49953 * 144.99738 * 5 3 2 28 28 H 0.97008 * 120.00262 * 43.60731 * 8 6 5 29 29 H 0.97002 * 120.00614 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.46831 * 299.99783 * 12 11 9 31 31 H 1.08992 * 109.47266 * 59.99984 * 12 11 9 32 32 H 0.97006 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5508 1.6583 0.1184 7 1 4.1815 0.7727 0.1963 8 7 4.0099 2.8293 0.8696 9 6 5.2315 2.8281 1.4390 10 8 5.9523 1.8552 1.3296 11 7 5.6536 3.9052 2.1306 12 6 6.9817 3.9042 2.7491 13 6 7.2071 5.2153 3.4572 14 1 6.4381 5.9736 3.4472 15 6 8.3949 5.4467 4.1179 16 7 8.5914 6.5906 4.7362 17 14 9.7246 4.1347 4.1358 18 1 10.6236 4.3252 2.9693 19 1 10.5115 4.2447 5.3904 20 1 9.0957 2.7915 4.0620 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8935 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.0104 1.1855 -2.0153 27 1 2.7214 2.9425 -1.5345 28 1 3.4347 3.6055 0.9572 29 1 5.0784 4.6814 2.2182 30 1 7.0471 3.0875 3.4680 31 1 7.7412 3.7717 1.9786 32 1 9.4273 6.7535 5.2007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308215325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:09 Heat of formation + Delta-G solvation = -20.966228 kcal Electronic energy + Delta-G solvation = -13560.061454 eV Core-core repulsion = 11135.006270 eV Total energy + Delta-G solvation = -2425.055184 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55065 -37.71792 -34.24808 -33.46417 -32.32316 -31.16339 -27.68147 -24.02664 -22.80246 -21.37914 -20.72162 -20.18188 -18.21941 -16.38375 -16.34355 -14.88536 -14.76890 -14.62988 -14.36020 -14.01712 -13.12485 -12.85761 -12.64084 -12.33800 -12.32667 -12.19936 -11.41440 -11.22120 -11.00039 -10.96704 -10.70348 -10.07900 -9.94877 -9.59758 -9.44343 -8.76631 -8.56321 -7.97823 -6.19381 -4.21304 3.14890 3.29646 3.36677 3.45273 3.54789 4.03168 4.35945 4.59785 4.75914 4.86054 4.97619 5.04305 5.16365 5.17448 5.34441 5.55793 5.71479 5.79925 5.89258 5.95733 5.98691 6.19651 6.75244 6.81738 7.13191 7.25187 7.41334 7.58116 8.29676 8.69460 8.82458 9.20596 9.42012 10.92605 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.069223 B = 0.005174 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.394685 B = 5410.244740 C = 5550.882169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.165 4.165 4 H 0.104 0.896 5 C -0.195 4.195 6 C 0.113 3.887 7 H 0.136 0.864 8 N -0.726 5.726 9 C 0.698 3.302 10 O -0.602 6.602 11 N -0.722 5.722 12 C 0.238 3.762 13 C -0.543 4.543 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.260 1.260 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.394 0.606 29 H 0.393 0.607 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.077 -9.140 -9.428 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.185 4.185 4 H 0.123 0.877 5 C -0.234 4.234 6 C 0.005 3.995 7 H 0.154 0.846 8 N -0.380 5.380 9 C 0.398 3.602 10 O -0.482 6.482 11 N -0.374 5.374 12 C 0.115 3.885 13 C -0.581 4.581 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.531 5.531 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.184 1.184 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.228 0.772 29 H 0.226 0.774 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.194 -9.902 -9.355 18.964 hybrid contribution 0.146 0.347 0.119 0.395 sum -13.048 -9.555 -9.237 18.624 Atomic orbital electron populations 1.21741 0.95547 1.01461 1.01823 1.21099 0.95817 0.93907 1.02238 1.22930 0.94509 0.98455 1.02605 0.87746 1.23640 1.04737 1.02557 0.92472 1.21447 0.92943 0.91073 0.93999 0.84647 1.44530 1.17291 1.18390 1.57753 1.16066 0.81157 0.84140 0.78872 1.90851 1.55816 1.34875 1.66626 1.45398 1.20510 1.16206 1.55267 1.19375 0.78604 0.97954 0.92537 1.21097 1.03351 0.99808 1.33801 0.90306 1.24780 0.98042 0.95534 0.94273 1.69883 1.25891 1.23322 1.33998 0.86806 0.81990 0.82943 0.77896 1.19839 1.20925 1.18417 0.92718 0.92799 0.92711 0.91703 0.91415 0.88290 0.88752 0.77234 0.77435 0.95847 0.96305 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.87 37.16 0.37 -0.75 16 2 C -0.09 -0.82 6.22 -26.73 -0.17 -0.99 16 3 C -0.17 -1.65 5.66 -90.59 -0.51 -2.16 16 4 H 0.10 0.99 8.08 -51.92 -0.42 0.57 16 5 C -0.19 -2.00 10.10 -26.73 -0.27 -2.27 16 6 C 0.11 1.49 6.16 -67.89 -0.42 1.07 16 7 H 0.14 2.03 7.40 -51.93 -0.38 1.65 16 8 N -0.73 -10.87 5.57 -58.64 -0.33 -11.19 16 9 C 0.70 14.14 8.57 -86.92 -0.74 13.40 16 10 O -0.60 -14.56 15.91 5.29 0.08 -14.48 16 11 N -0.72 -15.17 5.55 -66.41 -0.37 -15.54 16 12 C 0.24 6.01 4.50 -5.19 -0.02 5.99 16 13 C -0.54 -15.09 9.83 -34.44 -0.34 -15.43 16 14 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 15 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 16 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 17 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.10 0.92 8.03 -51.93 -0.42 0.50 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.39 4.74 8.84 -40.82 -0.36 4.38 16 29 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 30 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 275.77 15.07 4.16 4.16 Total: -1.00 -32.36 275.77 -7.34 -39.71 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.79 Total: 5.31 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.20 Total: 0.97 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.08 Total: -52.69 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.08 Total: -14.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.36 -7.34 -39.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308215325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.741 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds