Wall clock time and date at job start Sun Mar 29 2020 21:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 H 1.09008 * 115.56055 * 29.29399 * 3 2 1 5 5 C 1.53000 * 117.49997 * 243.60886 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.49592 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 N 1.46501 * 117.49747 * 252.51859 * 6 5 3 9 9 C 1.34778 * 120.00167 * 223.61209 * 8 6 5 10 10 O 1.21581 * 119.99875 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99851 * 180.02562 * 9 8 6 12 12 C 1.46505 * 119.99844 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47139 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00008 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00022 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99701 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47249 * 90.00513 * 17 15 13 19 19 H 1.48504 * 109.46862 * 209.99918 * 17 15 13 20 20 H 1.48500 * 109.47540 * 329.99996 * 17 15 13 21 21 H 1.09000 * 109.46540 * 60.00014 * 1 2 3 22 22 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47122 * 300.00432 * 1 2 3 24 24 H 1.08999 * 109.47637 * 239.99610 * 2 1 3 25 25 H 1.09004 * 109.47028 * 119.99895 * 2 1 3 26 26 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 27 27 H 1.09002 * 117.49953 * 144.99738 * 5 3 2 28 28 H 0.97008 * 120.00262 * 43.60731 * 8 6 5 29 29 H 0.97002 * 120.00614 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.46831 * 299.99783 * 12 11 9 31 31 H 1.08992 * 109.47266 * 59.99984 * 12 11 9 32 32 H 0.97006 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5508 1.6583 0.1184 7 1 4.1815 0.7727 0.1963 8 7 4.0099 2.8293 0.8696 9 6 5.2315 2.8281 1.4390 10 8 5.9523 1.8552 1.3296 11 7 5.6536 3.9052 2.1306 12 6 6.9817 3.9042 2.7491 13 6 7.2071 5.2153 3.4572 14 1 6.4381 5.9736 3.4472 15 6 8.3949 5.4467 4.1179 16 7 8.5914 6.5906 4.7362 17 14 9.7246 4.1347 4.1358 18 1 10.6236 4.3252 2.9693 19 1 10.5115 4.2447 5.3904 20 1 9.0957 2.7915 4.0620 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8935 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.0104 1.1855 -2.0153 27 1 2.7214 2.9425 -1.5345 28 1 3.4347 3.6055 0.9572 29 1 5.0784 4.6814 2.2182 30 1 7.0471 3.0875 3.4680 31 1 7.7412 3.7717 1.9786 32 1 9.4273 6.7535 5.2007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308215325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:08 Heat of formation + Delta-G solvation = -44.478030 kcal Electronic energy + Delta-G solvation = -13561.081002 eV Core-core repulsion = 11135.006270 eV Total energy + Delta-G solvation = -2426.074732 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02386 -38.82969 -36.14058 -34.76733 -34.22040 -32.17696 -29.64574 -24.83305 -24.43371 -22.81074 -21.90869 -21.37626 -19.89734 -18.32905 -17.67810 -16.53344 -16.42061 -15.84976 -15.44430 -15.24965 -14.88308 -14.43007 -14.31437 -13.56818 -13.50953 -13.03335 -12.91392 -12.71382 -12.12140 -12.02842 -11.92235 -11.91318 -11.65741 -11.34434 -10.91478 -10.90032 -10.11486 -9.44154 -8.39603 -6.46613 1.34347 1.36032 1.49735 1.77611 2.10848 2.29515 2.94954 2.98695 3.38791 3.78792 3.89345 4.07868 4.30693 4.51618 4.57636 4.73336 4.83716 4.92110 4.99104 5.04939 5.19624 5.23961 5.24693 5.30703 5.49923 5.52986 5.62492 5.97635 6.27458 6.55345 7.13569 7.25016 7.64187 8.75138 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.069223 B = 0.005174 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.394685 B = 5410.244740 C = 5550.882169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.141 4.141 4 H 0.116 0.884 5 C -0.175 4.175 6 C 0.072 3.928 7 H 0.112 0.888 8 N -0.705 5.705 9 C 0.697 3.303 10 O -0.644 6.644 11 N -0.721 5.721 12 C 0.251 3.749 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.027 3.973 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.261 1.261 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.411 0.589 29 H 0.405 0.595 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.235 -9.889 -10.457 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.161 4.161 4 H 0.134 0.866 5 C -0.214 4.214 6 C -0.034 4.034 7 H 0.130 0.870 8 N -0.359 5.359 9 C 0.396 3.604 10 O -0.527 6.527 11 N -0.374 5.374 12 C 0.127 3.873 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.173 4.173 16 N -0.570 5.570 17 Si 0.762 3.238 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.185 1.185 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.247 0.753 29 H 0.241 0.759 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.428 -10.633 -10.413 20.728 hybrid contribution 0.394 0.590 0.396 0.812 sum -14.034 -10.043 -10.017 19.954 Atomic orbital electron populations 1.21718 0.94220 1.02170 1.02164 1.21154 0.96914 0.93046 1.02229 1.23005 0.92004 0.99493 1.01610 0.86598 1.23715 1.02369 1.03604 0.91698 1.21587 0.94962 0.89914 0.96941 0.87021 1.44298 1.15474 1.19619 1.56514 1.16170 0.82304 0.83105 0.78773 1.90817 1.57501 1.36257 1.68115 1.45105 1.19495 1.17269 1.55578 1.18965 0.80545 0.95957 0.91862 1.21273 1.02993 1.00333 1.33862 0.92249 1.25578 1.00328 0.97479 0.93927 1.69979 1.26912 1.25106 1.34988 0.85847 0.79366 0.80041 0.78578 1.18917 1.19685 1.18549 0.92006 0.92009 0.92715 0.91030 0.92273 0.87036 0.87672 0.75283 0.75941 0.97155 0.97236 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.87 71.98 0.71 -1.08 16 2 C -0.10 -1.48 6.22 30.59 0.19 -1.29 16 3 C -0.14 -2.47 5.66 -10.77 -0.06 -2.53 16 4 H 0.12 1.81 8.08 -2.38 -0.02 1.79 16 5 C -0.18 -3.11 10.10 30.60 0.31 -2.80 16 6 C 0.07 1.82 6.16 45.02 0.28 2.09 16 7 H 0.11 3.37 7.40 -2.39 -0.02 3.35 16 8 N -0.70 -20.24 5.57 -457.70 -2.55 -22.79 16 9 C 0.70 28.01 8.57 179.05 1.53 29.54 16 10 O -0.64 -31.41 15.91 -3.97 -0.06 -31.47 16 11 N -0.72 -30.15 5.55 -482.29 -2.68 -32.82 16 12 C 0.25 12.71 4.50 85.63 0.38 13.10 16 13 C -0.55 -30.66 9.83 25.60 0.25 -30.40 16 14 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 15 C 0.03 1.56 5.47 84.65 0.46 2.02 16 16 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 17 Si 0.94 44.61 27.47 68.60 1.88 46.49 16 18 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 21 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.07 1.02 7.87 -2.39 -0.02 1.00 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.11 1.73 8.03 -2.39 -0.02 1.71 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.41 9.05 8.84 -92.70 -0.82 8.23 16 29 H 0.41 14.66 8.34 -92.71 -0.77 13.89 16 30 H 0.01 0.56 7.20 -2.38 -0.02 0.54 16 31 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 32 H 0.27 15.25 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -69.24 275.77 0.42 -68.81 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.53 Total: 18.79 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.06 Total: 8.65 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -4.93 Total: -111.27 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.06 Total: -31.47 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -69.24 0.42 -68.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308215325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.334 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds