Wall clock time and date at job start Sun Mar 29 2020 21:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.56082 * 2 1 4 4 C 1.53000 * 117.49856 * 145.69272 * 2 1 3 5 5 C 1.53006 * 117.49659 * 214.31651 * 2 1 3 6 6 H 1.08999 * 117.51470 * 145.03062 * 5 2 1 7 7 C 1.50695 * 117.49855 * 0.02562 * 5 2 1 8 8 O 1.20825 * 120.00224 * 359.97438 * 7 5 2 9 9 O 1.34232 * 119.99727 * 179.97438 * 7 5 2 10 10 C 1.45206 * 116.99878 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.46781 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47183 * 60.00274 * 17 15 13 19 19 H 1.48496 * 109.47425 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47216 * 300.00267 * 17 15 13 21 21 H 1.09002 * 109.47309 * 205.68382 * 1 2 3 22 22 H 1.09002 * 109.47310 * 325.68294 * 1 2 3 23 23 H 1.09003 * 109.47297 * 85.68153 * 1 2 3 24 24 H 1.09000 * 117.49982 * 0.02562 * 4 2 1 25 25 H 1.09000 * 117.51865 * 214.96613 * 4 2 1 26 26 H 1.08993 * 109.46780 * 59.99892 * 10 9 7 27 27 H 1.09000 * 109.47070 * 300.00158 * 10 9 7 28 28 H 1.08993 * 109.47839 * 60.00189 * 11 10 9 29 29 H 1.09000 * 109.47160 * 299.99751 * 11 10 9 30 30 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 31 31 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 32 32 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7652 6 1 3.1716 -0.8755 -1.2684 7 6 1.3719 -2.1401 -1.4615 8 8 0.1683 -2.0531 -1.4021 9 8 1.9392 -3.1446 -2.1478 10 6 1.0451 -4.0897 -2.7929 11 6 1.8679 -5.1551 -3.5201 12 6 0.9258 -6.1505 -4.2003 13 6 1.7360 -7.1996 -4.9172 14 1 2.8150 -7.1600 -4.8907 15 6 1.1000 -8.2099 -5.6069 16 7 -0.2139 -8.2578 -5.6396 17 14 2.1043 -9.5099 -6.4961 18 1 2.9616 -10.2274 -5.5186 19 1 1.1901 -10.4760 -7.1562 20 1 2.9599 -8.8593 -7.5209 21 1 -0.3634 -0.9261 0.4454 22 1 -0.3634 0.8488 0.5794 23 1 -0.3634 0.0774 -1.0248 24 1 1.6112 -1.8588 1.2678 25 1 3.1716 -0.8757 1.2682 26 1 0.4163 -3.5630 -3.5106 27 1 0.4169 -4.5669 -2.0408 28 1 2.4965 -5.6817 -2.8021 29 1 2.4964 -4.6782 -4.2722 30 1 0.2969 -6.6275 -3.4486 31 1 0.2975 -5.6236 -4.9185 32 1 -0.6614 -8.9687 -6.1245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308270729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:32 Heat of formation + Delta-G solvation = -101.118925 kcal Electronic energy + Delta-G solvation = -13557.836682 eV Core-core repulsion = 11097.013065 eV Total energy + Delta-G solvation = -2460.823617 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.71341 -38.83076 -37.12064 -35.94779 -33.70165 -29.87711 -28.99055 -26.26880 -24.58355 -22.21945 -22.19194 -20.94777 -18.90965 -18.44186 -17.66977 -17.05794 -16.50463 -16.19490 -15.53888 -14.83216 -14.23432 -14.18936 -13.86144 -13.74179 -13.54660 -13.22825 -12.80423 -12.53593 -12.42661 -12.40491 -12.07968 -11.67816 -11.44503 -11.35578 -11.30376 -11.22555 -10.89166 -10.57928 -8.22711 -6.34825 1.05895 1.41010 1.44623 1.52339 1.62875 2.41012 2.73887 3.11022 3.54403 3.68076 3.84636 3.96534 4.03554 4.10293 4.37852 4.43408 4.73612 4.76578 4.85192 4.85984 4.93837 5.00829 5.04877 5.14275 5.37167 5.46078 5.59020 5.60935 5.78126 6.17508 6.72297 6.80964 7.34875 8.89437 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.087113 B = 0.004621 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.345393 B = 6057.934755 C = 6279.503662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.112 4.112 3 H 0.150 0.850 4 C -0.134 4.134 5 C -0.186 4.186 6 H 0.157 0.843 7 C 0.478 3.522 8 O -0.535 6.535 9 O -0.359 6.359 10 C 0.079 3.921 11 C -0.094 4.094 12 C 0.026 3.974 13 C -0.546 4.546 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.265 1.265 21 H 0.042 0.958 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.089 0.911 25 H 0.143 0.857 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.066 0.934 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.518 15.512 11.454 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.130 4.130 3 H 0.168 0.832 4 C -0.170 4.170 5 C -0.204 4.204 6 H 0.174 0.826 7 C 0.323 3.677 8 O -0.425 6.425 9 O -0.275 6.275 10 C 0.005 3.995 11 C -0.131 4.131 12 C -0.011 4.011 13 C -0.584 4.584 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.190 1.190 21 H 0.061 0.939 22 H 0.094 0.906 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.161 0.839 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.006 15.401 11.380 20.069 hybrid contribution -0.284 -1.066 -0.809 1.368 sum 5.722 14.335 10.572 18.708 Atomic orbital electron populations 1.21400 0.92975 1.01567 1.01575 1.22685 0.95608 0.94954 0.99726 0.83238 1.23326 1.04409 1.00689 0.88603 1.22032 1.02562 0.98912 0.96925 0.82559 1.23532 0.87701 0.80672 0.75807 1.90651 1.17471 1.74567 1.59823 1.86480 1.42300 1.36932 1.61834 1.23103 0.91993 0.88771 0.95627 1.21458 0.98501 0.94426 0.98742 1.18938 0.94518 0.93276 0.94416 1.21597 0.93788 1.10707 1.32278 0.91640 1.26024 0.96079 1.00481 0.97267 1.70097 1.09484 1.34372 1.43454 0.85421 0.78271 0.78122 0.78762 1.18989 1.20858 1.19013 0.93916 0.90551 0.93480 0.89223 0.83941 0.92090 0.92124 0.91497 0.91498 0.98526 0.98532 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.43 71.98 0.61 -1.84 16 2 C -0.11 -1.80 6.41 -10.79 -0.07 -1.87 16 3 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.13 -2.02 9.88 30.60 0.30 -1.72 16 5 C -0.19 -3.75 6.30 -11.54 -0.07 -3.83 16 6 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 7 C 0.48 14.78 7.72 71.23 0.55 15.33 16 8 O -0.53 -19.27 12.86 21.97 0.28 -18.99 16 9 O -0.36 -12.40 10.22 -51.44 -0.53 -12.92 16 10 C 0.08 3.05 5.47 71.98 0.39 3.44 16 11 C -0.09 -4.01 5.53 30.60 0.17 -3.84 16 12 C 0.03 1.38 4.97 29.85 0.15 1.53 16 13 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 14 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 17 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H 0.04 1.06 7.02 -2.39 -0.02 1.04 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.18 7.26 -2.39 -0.02 1.16 16 24 H 0.09 1.60 8.05 -2.39 -0.02 1.59 16 25 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 27 H 0.06 2.39 8.13 -2.39 -0.02 2.37 16 28 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -67.84 276.29 5.87 -61.97 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.08 Total: 4.18 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 2.72 Total: -23.41 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.28 Total: -57.06 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.24 Total: -31.91 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.84 5.87 -61.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308270729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.153 kcal (2) G-P(sol) polarization free energy of solvation -67.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds