Wall clock time and date at job start Sun Mar 29 2020 21:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.55899 * 2 1 4 4 C 1.53002 * 117.49968 * 145.68194 * 2 1 3 5 5 C 1.53000 * 60.02940 * 107.50530 * 4 2 1 6 6 H 1.08999 * 117.49942 * 252.47315 * 5 4 2 7 7 C 1.50706 * 117.49681 * 107.47810 * 5 4 2 8 8 O 1.20823 * 120.00159 * 291.39039 * 7 5 4 9 9 O 1.34233 * 119.99835 * 111.39079 * 7 5 4 10 10 C 1.45196 * 116.99888 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47298 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47097 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46619 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00561 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99857 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99763 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00379 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47105 * 59.99838 * 17 15 13 19 19 H 1.48495 * 109.47396 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46919 * 300.00234 * 17 15 13 21 21 H 1.08994 * 109.47641 * 325.70816 * 1 2 3 22 22 H 1.09000 * 109.46660 * 85.71101 * 1 2 3 23 23 H 1.08997 * 109.47098 * 205.70282 * 1 2 3 24 24 H 1.09002 * 117.49918 * 0.02562 * 4 2 1 25 25 H 1.09002 * 117.49754 * 215.00713 * 4 2 1 26 26 H 1.09000 * 109.47509 * 300.00207 * 10 9 7 27 27 H 1.09001 * 109.47137 * 60.00155 * 10 9 7 28 28 H 1.09007 * 109.46775 * 300.00070 * 11 10 9 29 29 H 1.09001 * 109.46993 * 59.99953 * 11 10 9 30 30 H 1.08994 * 109.47007 * 299.99763 * 12 11 10 31 31 H 1.08998 * 109.47032 * 60.00218 * 12 11 10 32 32 H 0.97005 * 119.99673 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 0.7651 5 6 2.2372 -1.1216 -0.7649 6 1 1.6128 -1.8597 -1.2681 7 6 3.5303 -0.7815 -1.4602 8 8 3.9708 0.3420 -1.4009 9 8 4.1926 -1.7268 -2.1455 10 6 5.4307 -1.3279 -2.7904 11 6 6.0374 -2.5296 -3.5175 12 6 7.3424 -2.1093 -4.1965 13 6 7.9402 -3.2932 -4.9121 14 1 7.4392 -4.2496 -4.8856 15 6 9.1262 -3.1551 -5.6016 16 7 9.7355 -1.9901 -5.6351 17 14 9.8669 -4.6224 -6.4893 18 1 8.9115 -5.1150 -7.5139 19 1 11.1329 -4.2142 -7.1493 20 1 10.1446 -5.7044 -5.5107 21 1 -0.3634 0.8490 0.5789 22 1 -0.3632 0.0769 -1.0248 23 1 -0.3633 -0.9260 0.4457 24 1 1.6112 -1.8586 1.2682 25 1 3.1713 -0.8749 1.2688 26 1 5.2268 -0.5340 -3.5090 27 1 6.1319 -0.9659 -2.0384 28 1 6.2413 -3.3238 -2.7992 29 1 5.3361 -2.8912 -4.2695 30 1 7.1388 -1.3150 -4.9147 31 1 8.0435 -1.7480 -3.4442 32 1 10.5697 -1.8929 -6.1205 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308270730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:36 Heat of formation + Delta-G solvation = -88.232527 kcal Electronic energy + Delta-G solvation = -13378.280484 eV Core-core repulsion = 10918.015663 eV Total energy + Delta-G solvation = -2460.264821 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39962 -37.74721 -36.03778 -33.97258 -31.69914 -29.17514 -27.22175 -24.82656 -22.90539 -21.23291 -20.40544 -19.90965 -17.65887 -16.71494 -16.23276 -16.02127 -14.60975 -14.46463 -14.17571 -13.84618 -13.40961 -12.84014 -12.33588 -12.13803 -12.12900 -11.81800 -11.69663 -10.94807 -10.71115 -10.64539 -10.61079 -10.40047 -10.36585 -10.26176 -9.70964 -9.48656 -9.17054 -8.38038 -6.02961 -4.06137 2.21621 2.82685 3.32920 3.37112 3.39779 3.54917 4.43018 4.45198 4.50217 4.63077 5.02500 5.04936 5.32813 5.38518 5.44502 5.47322 5.58915 5.64326 5.71038 5.75986 6.02276 6.03087 6.52522 6.54959 6.86131 6.99518 7.60563 7.71867 7.94967 7.98037 8.36502 8.99908 9.58029 11.08479 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.092965 B = 0.004356 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.115022 B = 6426.728652 C = 6578.774106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.124 4.124 3 H 0.119 0.881 4 C -0.146 4.146 5 C -0.167 4.167 6 H 0.134 0.866 7 C 0.486 3.514 8 O -0.514 6.514 9 O -0.354 6.354 10 C 0.068 3.932 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 1.644 10.834 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 H 0.137 0.863 4 C -0.183 4.183 5 C -0.186 4.186 6 H 0.152 0.848 7 C 0.330 3.670 8 O -0.403 6.403 9 O -0.270 6.270 10 C -0.005 4.005 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.127 0.873 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.894 2.058 10.745 19.295 hybrid contribution 0.692 -0.675 -0.654 1.167 sum -15.202 1.383 10.091 18.299 Atomic orbital electron populations 1.21407 0.91859 1.02364 1.02428 1.22508 0.95531 0.95107 1.01025 0.86334 1.23182 1.03290 1.01345 0.90460 1.21860 0.95385 1.05691 0.95649 0.84791 1.22507 0.84990 0.83119 0.76433 1.90643 1.67906 1.22619 1.59143 1.86485 1.37623 1.41501 1.61401 1.23518 0.81042 1.00081 0.95882 1.21768 0.99158 0.95098 0.98633 1.19050 0.89685 0.97242 0.95342 1.21143 1.06793 0.96179 1.31958 0.92460 1.25036 0.96996 0.95951 0.96489 1.69961 1.17681 1.23256 1.42497 0.86594 0.78416 0.82737 0.79887 1.20170 1.21257 1.20166 0.91520 0.91738 0.92146 0.87261 0.88027 0.91511 0.91542 0.92131 0.92127 0.96222 0.96231 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.19 37.16 0.38 -0.48 16 2 C -0.12 -1.18 5.92 -90.58 -0.54 -1.72 16 3 H 0.12 1.30 7.67 -51.93 -0.40 0.90 16 4 C -0.15 -1.33 9.88 -26.73 -0.26 -1.59 16 5 C -0.17 -1.90 6.03 -91.73 -0.55 -2.45 16 6 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 7 C 0.49 7.80 7.74 36.01 0.28 8.08 16 8 O -0.51 -9.58 16.01 -18.75 -0.30 -9.88 16 9 O -0.35 -6.24 10.22 -39.27 -0.40 -6.64 16 10 C 0.07 1.30 5.47 37.16 0.20 1.50 16 11 C -0.11 -2.32 5.53 -26.73 -0.15 -2.47 16 12 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 13 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 24 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 27 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 28 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 281.74 15.07 4.25 4.25 Total: -1.00 -31.57 281.74 -6.93 -38.49 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -4.99 Total: -4.26 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.19 Total: -12.31 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.70 Total: -16.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.57 -6.93 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308270730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.740 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds