Wall clock time and date at job start Sun Mar 29 2020 21:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.55899 * 2 1 4 4 C 1.53002 * 117.49968 * 145.68194 * 2 1 3 5 5 C 1.53000 * 60.02940 * 107.50530 * 4 2 1 6 6 H 1.08999 * 117.49942 * 252.47315 * 5 4 2 7 7 C 1.50706 * 117.49681 * 107.47810 * 5 4 2 8 8 O 1.20823 * 120.00159 * 291.39039 * 7 5 4 9 9 O 1.34233 * 119.99835 * 111.39079 * 7 5 4 10 10 C 1.45196 * 116.99888 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47298 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47097 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46619 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00561 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99857 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99763 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00379 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47105 * 59.99838 * 17 15 13 19 19 H 1.48495 * 109.47396 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46919 * 300.00234 * 17 15 13 21 21 H 1.08994 * 109.47641 * 325.70816 * 1 2 3 22 22 H 1.09000 * 109.46660 * 85.71101 * 1 2 3 23 23 H 1.08997 * 109.47098 * 205.70282 * 1 2 3 24 24 H 1.09002 * 117.49918 * 0.02562 * 4 2 1 25 25 H 1.09002 * 117.49754 * 215.00713 * 4 2 1 26 26 H 1.09000 * 109.47509 * 300.00207 * 10 9 7 27 27 H 1.09001 * 109.47137 * 60.00155 * 10 9 7 28 28 H 1.09007 * 109.46775 * 300.00070 * 11 10 9 29 29 H 1.09001 * 109.46993 * 59.99953 * 11 10 9 30 30 H 1.08994 * 109.47007 * 299.99763 * 12 11 10 31 31 H 1.08998 * 109.47032 * 60.00218 * 12 11 10 32 32 H 0.97005 * 119.99673 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 0.7651 5 6 2.2372 -1.1216 -0.7649 6 1 1.6128 -1.8597 -1.2681 7 6 3.5303 -0.7815 -1.4602 8 8 3.9708 0.3420 -1.4009 9 8 4.1926 -1.7268 -2.1455 10 6 5.4307 -1.3279 -2.7904 11 6 6.0374 -2.5296 -3.5175 12 6 7.3424 -2.1093 -4.1965 13 6 7.9402 -3.2932 -4.9121 14 1 7.4392 -4.2496 -4.8856 15 6 9.1262 -3.1551 -5.6016 16 7 9.7355 -1.9901 -5.6351 17 14 9.8669 -4.6224 -6.4893 18 1 8.9115 -5.1150 -7.5139 19 1 11.1329 -4.2142 -7.1493 20 1 10.1446 -5.7044 -5.5107 21 1 -0.3634 0.8490 0.5789 22 1 -0.3632 0.0769 -1.0248 23 1 -0.3633 -0.9260 0.4457 24 1 1.6112 -1.8586 1.2682 25 1 3.1713 -0.8749 1.2688 26 1 5.2268 -0.5340 -3.5090 27 1 6.1319 -0.9659 -2.0384 28 1 6.2413 -3.3238 -2.7992 29 1 5.3361 -2.8912 -4.2695 30 1 7.1388 -1.3150 -4.9147 31 1 8.0435 -1.7480 -3.4442 32 1 10.5697 -1.8929 -6.1205 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308270730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:36 Heat of formation + Delta-G solvation = -105.868491 kcal Electronic energy + Delta-G solvation = -13379.045237 eV Core-core repulsion = 10918.015663 eV Total energy + Delta-G solvation = -2461.029574 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68850 -38.78698 -37.34282 -35.95796 -33.70715 -29.95932 -28.98633 -26.20131 -24.58298 -22.21529 -22.08878 -21.01349 -18.94533 -18.54419 -17.73361 -17.53874 -16.50809 -15.80134 -15.30241 -15.07105 -14.40614 -14.03395 -13.93734 -13.83271 -13.57017 -12.96388 -12.81173 -12.55132 -12.43119 -12.37027 -12.10790 -11.82453 -11.50811 -11.45610 -11.33843 -11.28581 -11.02596 -10.58142 -8.22920 -6.35041 0.99329 1.40863 1.44632 1.52004 1.57771 2.40826 2.71773 3.10766 3.56779 3.62985 3.77158 3.94796 4.01753 4.10350 4.36087 4.37839 4.67432 4.75731 4.83110 4.86409 4.93830 5.02106 5.04391 5.19193 5.38679 5.41038 5.49060 5.60619 5.77903 6.17123 6.65216 6.80620 7.34605 8.89210 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.092965 B = 0.004356 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.115022 B = 6426.728652 C = 6578.774106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.130 4.130 5 C -0.182 4.182 6 H 0.157 0.843 7 C 0.481 3.519 8 O -0.547 6.547 9 O -0.355 6.355 10 C 0.077 3.923 11 C -0.093 4.093 12 C 0.026 3.974 13 C -0.546 4.546 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.265 1.265 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.142 0.858 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.067 0.933 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.772 0.030 11.430 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.138 4.138 3 H 0.117 0.883 4 C -0.167 4.167 5 C -0.201 4.201 6 H 0.174 0.826 7 C 0.327 3.673 8 O -0.438 6.438 9 O -0.271 6.271 10 C 0.003 3.997 11 C -0.131 4.131 12 C -0.012 4.012 13 C -0.584 4.584 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.190 1.190 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.160 0.840 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.461 0.436 11.356 20.833 hybrid contribution 1.142 -0.101 -0.788 1.392 sum -16.319 0.334 10.568 19.444 Atomic orbital electron populations 1.21433 0.89447 1.03842 1.02901 1.22608 0.97209 0.93935 1.00037 0.88340 1.23368 1.03274 1.01529 0.88549 1.22046 0.93305 1.07776 0.96939 0.82575 1.23522 0.85878 0.82362 0.75574 1.90627 1.69031 1.23864 1.60270 1.86478 1.36825 1.42110 1.61722 1.23152 0.82025 0.98829 0.95690 1.21463 0.97012 0.95848 0.98773 1.18937 0.91625 0.96161 0.94437 1.21601 1.07384 0.97063 1.32314 0.91586 1.26040 0.97491 0.99132 0.97288 1.70102 1.18207 1.25682 1.43429 0.85413 0.77540 0.78817 0.78763 1.18982 1.20891 1.18959 0.90492 0.91701 0.90312 0.83962 0.88975 0.92045 0.92036 0.91402 0.91403 0.98518 0.98510 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.19 71.98 0.73 -0.57 16 2 C -0.12 -2.07 5.92 -10.77 -0.06 -2.14 16 3 H 0.10 2.12 7.67 -2.39 -0.02 2.10 16 4 C -0.13 -2.05 9.88 30.60 0.30 -1.75 16 5 C -0.18 -3.81 6.03 -11.51 -0.07 -3.88 16 6 H 0.16 2.56 8.14 -2.39 -0.02 2.55 16 7 C 0.48 15.29 7.74 71.24 0.55 15.84 16 8 O -0.55 -20.74 16.01 21.97 0.35 -20.39 16 9 O -0.36 -12.37 10.22 -51.45 -0.53 -12.89 16 10 C 0.08 2.99 5.47 71.98 0.39 3.38 16 11 C -0.09 -3.99 5.53 30.59 0.17 -3.82 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.55 -31.27 9.11 25.60 0.23 -31.03 16 14 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 17 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.08 0.60 7.90 -2.39 -0.02 0.58 16 24 H 0.14 1.32 8.05 -2.39 -0.02 1.30 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 2.44 8.13 -2.39 -0.02 2.42 16 27 H 0.06 2.44 8.13 -2.39 -0.02 2.42 16 28 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -68.37 281.74 6.07 -62.29 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.08 Total: 3.96 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 2.86 Total: -22.09 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.17 Total: -33.28 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -68.37 6.07 -62.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308270730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.577 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds