Wall clock time and date at job start Sun Mar 29 2020 21:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 C 1.50691 * 109.47137 * 120.00124 * 2 1 3 5 5 O 1.20831 * 120.00235 * 326.54994 * 4 2 1 6 6 O 1.34226 * 120.00269 * 146.54692 * 4 2 1 7 7 C 1.45203 * 117.00384 * 185.17962 * 6 4 2 8 8 C 1.53003 * 109.47269 * 182.33650 * 7 6 4 9 9 C 1.50700 * 115.54777 * 295.10069 * 8 7 6 10 10 H 1.08003 * 120.00126 * 115.54829 * 9 8 7 11 11 C 1.37883 * 119.99916 * 295.27142 * 9 8 7 12 12 N 1.31507 * 119.99874 * 178.00931 * 11 9 8 13 13 Si 1.86801 * 119.99743 * 358.01351 * 11 9 8 14 14 H 1.48500 * 109.46854 * 92.47116 * 13 11 9 15 15 H 1.48496 * 109.46630 * 212.46988 * 13 11 9 16 16 H 1.48493 * 109.47163 * 332.46919 * 13 11 9 17 17 C 1.53004 * 117.49980 * 80.76615 * 8 7 6 18 18 C 1.52990 * 117.49947 * 149.42908 * 8 7 6 19 19 H 1.08998 * 109.46764 * 300.00052 * 1 2 3 20 20 H 1.09000 * 109.46914 * 60.00223 * 1 2 3 21 21 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46741 * 240.00365 * 2 1 3 23 23 H 1.08994 * 109.46884 * 184.30768 * 3 2 1 24 24 H 1.09001 * 109.47110 * 304.30524 * 3 2 1 25 25 H 1.08999 * 109.47337 * 64.30136 * 3 2 1 26 26 H 1.08992 * 109.47419 * 62.33317 * 7 6 4 27 27 H 1.08999 * 109.46691 * 302.33279 * 7 6 4 28 28 H 0.97002 * 119.99965 * 179.97438 * 12 11 9 29 29 H 1.08999 * 117.49546 * 215.00412 * 17 8 7 30 30 H 1.09002 * 117.49863 * 0.02627 * 17 8 7 31 31 H 1.09006 * 117.50018 * 359.97438 * 18 8 7 32 32 H 1.08997 * 117.49854 * 144.97529 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.4107 -0.6412 2.2641 6 8 3.1705 -1.4201 1.1780 7 6 3.5340 -2.1718 2.3660 8 6 4.8793 -2.8645 2.1395 9 6 4.8931 -3.9221 1.0661 10 1 5.4939 -3.7837 0.1793 11 6 4.1433 -5.0692 1.2187 12 7 4.1246 -5.9743 0.2648 13 14 3.1541 -5.3373 2.7804 14 1 1.7749 -4.8218 2.5873 15 1 3.1012 -6.7888 3.0896 16 1 3.7997 -4.6147 3.9055 17 6 6.1455 -2.0249 2.3203 18 6 5.7746 -3.0851 3.3602 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8901 23 1 3.1273 1.4434 -0.0772 24 1 1.6151 1.9781 -0.8489 25 1 1.7411 1.9336 0.9260 26 1 2.7692 -2.9212 2.5698 27 1 3.6132 -1.4931 3.2152 28 1 3.5974 -6.7814 0.3723 29 1 6.9885 -2.2376 1.6629 30 1 6.0201 -0.9791 2.6011 31 1 5.4054 -2.7364 4.3248 32 1 6.3734 -3.9955 3.3872 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308277768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:45 Heat of formation + Delta-G solvation = -74.904625 kcal Electronic energy + Delta-G solvation = -14472.276123 eV Core-core repulsion = 12012.589243 eV Total energy + Delta-G solvation = -2459.686880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02022 -37.22437 -35.48624 -34.38070 -32.14930 -27.57716 -27.16964 -25.40348 -23.43777 -21.59499 -19.64120 -19.12256 -17.37632 -16.72277 -15.89619 -15.48364 -14.82251 -14.18603 -13.93423 -13.27537 -12.95001 -12.76235 -12.46128 -12.21621 -12.07212 -11.81252 -11.17680 -11.09184 -10.98735 -10.85961 -10.63554 -10.33830 -9.94531 -9.91506 -9.52757 -9.05742 -8.68120 -8.53186 -6.13479 -4.14173 2.65317 3.20897 3.25677 3.35379 3.39048 4.37629 4.75361 4.86483 5.02733 5.09722 5.23377 5.51428 5.58222 5.65351 5.72863 5.77818 5.86516 5.89408 6.00229 6.13085 6.14995 6.22242 6.34542 6.45352 6.64820 6.86828 7.07258 7.17888 7.68349 8.30877 8.48168 8.89922 9.48695 10.98425 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.010510 C = 0.009410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.299117 B = 2663.487654 C = 2974.822465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.141 4.141 4 C 0.457 3.543 5 O -0.526 6.526 6 O -0.327 6.327 7 C 0.105 3.895 8 C -0.008 4.008 9 C -0.476 4.476 10 H 0.080 0.920 11 C 0.078 3.922 12 N -0.895 5.895 13 Si 0.862 3.138 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.251 1.251 17 C -0.175 4.175 18 C -0.183 4.183 19 H 0.066 0.934 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.106 0.894 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.265 0.735 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 11.114 0.845 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.198 4.198 4 C 0.301 3.699 5 O -0.416 6.416 6 O -0.242 6.242 7 C 0.031 3.969 8 C -0.009 4.009 9 C -0.514 4.514 10 H 0.098 0.902 11 C -0.124 4.124 12 N -0.532 5.532 13 Si 0.690 3.310 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.175 1.175 17 C -0.212 4.212 18 C -0.221 4.221 19 H 0.085 0.915 20 H 0.087 0.913 21 H 0.079 0.921 22 H 0.124 0.876 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.998 10.921 1.115 11.683 hybrid contribution -0.675 -0.404 0.966 1.245 sum -4.673 10.517 2.081 11.695 Atomic orbital electron populations 1.21738 0.92290 1.02923 1.02684 1.20974 0.97373 0.97017 0.95542 1.21743 1.02019 0.93284 1.02762 1.23761 0.79065 0.76871 0.90248 1.90587 1.57386 1.60800 1.32841 1.86594 1.38504 1.56292 1.42793 1.22957 0.98049 0.92381 0.83484 1.19328 0.86154 0.97980 0.97464 1.20242 1.28354 0.99464 1.03301 0.90160 1.24920 0.95815 0.95697 0.95975 1.69874 1.40981 1.09700 1.32626 0.87116 0.80844 0.77574 0.85457 1.20557 1.21442 1.17507 1.22777 1.00788 0.94532 1.03110 1.23088 1.05493 1.00611 0.92874 0.91471 0.91313 0.92117 0.87628 0.91501 0.91042 0.92101 0.92308 0.93213 0.92490 0.89293 0.90840 0.91091 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.83 37.16 0.33 -1.40 16 2 C -0.09 -1.28 3.35 -91.77 -0.31 -1.59 16 3 C -0.14 -1.61 9.18 37.16 0.34 -1.27 16 4 C 0.46 8.87 6.97 36.00 0.25 9.12 16 5 O -0.53 -11.25 15.94 -18.75 -0.30 -11.55 16 6 O -0.33 -7.24 10.15 -39.25 -0.40 -7.64 16 7 C 0.10 2.41 4.94 37.16 0.18 2.60 16 8 C -0.01 -0.20 1.06 -155.66 -0.16 -0.36 16 9 C -0.48 -13.36 9.35 -34.44 -0.32 -13.68 16 10 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 11 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 12 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 13 Si 0.86 21.66 24.77 -169.99 -4.21 17.45 16 14 H -0.28 -7.08 7.03 56.52 0.40 -6.68 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.25 -5.91 5.92 56.52 0.33 -5.57 16 17 C -0.17 -3.57 9.96 -26.69 -0.27 -3.84 16 18 C -0.18 -3.85 8.34 -26.70 -0.22 -4.07 16 19 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.44 4.69 -51.93 -0.24 1.20 16 27 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 270.64 15.07 4.08 4.08 Total: -1.00 -31.36 270.64 -5.26 -36.62 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.92 Total: -0.26 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.28 Total: -12.33 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.36 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.70 Total: -19.19 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.21 Total: 17.45 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.36 -5.26 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308277768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.289 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds