Wall clock time and date at job start Sun Mar 29 2020 21:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 C 1.50691 * 109.47137 * 120.00124 * 2 1 3 5 5 O 1.20831 * 120.00235 * 326.54994 * 4 2 1 6 6 O 1.34226 * 120.00269 * 146.54692 * 4 2 1 7 7 C 1.45203 * 117.00384 * 185.17962 * 6 4 2 8 8 C 1.53003 * 109.47269 * 182.33650 * 7 6 4 9 9 C 1.50700 * 115.54777 * 295.10069 * 8 7 6 10 10 H 1.08003 * 120.00126 * 115.54829 * 9 8 7 11 11 C 1.37883 * 119.99916 * 295.27142 * 9 8 7 12 12 N 1.31507 * 119.99874 * 178.00931 * 11 9 8 13 13 Si 1.86801 * 119.99743 * 358.01351 * 11 9 8 14 14 H 1.48500 * 109.46854 * 92.47116 * 13 11 9 15 15 H 1.48496 * 109.46630 * 212.46988 * 13 11 9 16 16 H 1.48493 * 109.47163 * 332.46919 * 13 11 9 17 17 C 1.53004 * 117.49980 * 80.76615 * 8 7 6 18 18 C 1.52990 * 117.49947 * 149.42908 * 8 7 6 19 19 H 1.08998 * 109.46764 * 300.00052 * 1 2 3 20 20 H 1.09000 * 109.46914 * 60.00223 * 1 2 3 21 21 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46741 * 240.00365 * 2 1 3 23 23 H 1.08994 * 109.46884 * 184.30768 * 3 2 1 24 24 H 1.09001 * 109.47110 * 304.30524 * 3 2 1 25 25 H 1.08999 * 109.47337 * 64.30136 * 3 2 1 26 26 H 1.08992 * 109.47419 * 62.33317 * 7 6 4 27 27 H 1.08999 * 109.46691 * 302.33279 * 7 6 4 28 28 H 0.97002 * 119.99965 * 179.97438 * 12 11 9 29 29 H 1.08999 * 117.49546 * 215.00412 * 17 8 7 30 30 H 1.09002 * 117.49863 * 0.02627 * 17 8 7 31 31 H 1.09006 * 117.50018 * 359.97438 * 18 8 7 32 32 H 1.08997 * 117.49854 * 144.97529 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.4107 -0.6412 2.2641 6 8 3.1705 -1.4201 1.1780 7 6 3.5340 -2.1718 2.3660 8 6 4.8793 -2.8645 2.1395 9 6 4.8931 -3.9221 1.0661 10 1 5.4939 -3.7837 0.1793 11 6 4.1433 -5.0692 1.2187 12 7 4.1246 -5.9743 0.2648 13 14 3.1541 -5.3373 2.7804 14 1 1.7749 -4.8218 2.5873 15 1 3.1012 -6.7888 3.0896 16 1 3.7997 -4.6147 3.9055 17 6 6.1455 -2.0249 2.3203 18 6 5.7746 -3.0851 3.3602 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8901 23 1 3.1273 1.4434 -0.0772 24 1 1.6151 1.9781 -0.8489 25 1 1.7411 1.9336 0.9260 26 1 2.7692 -2.9212 2.5698 27 1 3.6132 -1.4931 3.2152 28 1 3.5974 -6.7814 0.3723 29 1 6.9885 -2.2376 1.6629 30 1 6.0201 -0.9791 2.6011 31 1 5.4054 -2.7364 4.3248 32 1 6.3734 -3.9955 3.3872 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308277768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:45 Heat of formation + Delta-G solvation = -94.238940 kcal Electronic energy + Delta-G solvation = -14473.114522 eV Core-core repulsion = 12012.589243 eV Total energy + Delta-G solvation = -2460.525278 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.58291 -38.93222 -37.13078 -35.56355 -34.31959 -29.29729 -28.13234 -27.44346 -24.81213 -23.24348 -21.17390 -20.89657 -18.94845 -18.56496 -17.60489 -17.09538 -16.65232 -15.61506 -15.28720 -14.99681 -14.68728 -14.29042 -13.97998 -13.69987 -13.15580 -13.05747 -13.02679 -12.78443 -12.33492 -12.18526 -12.15245 -12.01049 -11.71554 -11.58519 -11.30973 -11.00282 -10.68124 -10.42268 -8.34226 -6.38259 1.14526 1.25142 1.30403 1.40645 1.75749 2.28436 2.93676 3.23766 3.63753 3.89331 3.92609 4.00853 4.09450 4.22132 4.37613 4.39106 4.63339 4.72553 4.78310 4.85166 4.86110 4.94145 5.00309 5.17657 5.21024 5.25918 5.45618 5.58796 5.63299 6.26249 6.65962 6.76481 7.27666 8.81443 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.010510 C = 0.009410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.299117 B = 2663.487654 C = 2974.822465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.135 4.135 4 C 0.449 3.551 5 O -0.549 6.549 6 O -0.346 6.346 7 C 0.107 3.893 8 C -0.044 4.044 9 C -0.475 4.475 10 H 0.038 0.962 11 C 0.025 3.975 12 N -0.943 5.943 13 Si 0.918 3.082 14 H -0.287 1.287 15 H -0.286 1.286 16 H -0.222 1.222 17 C -0.155 4.155 18 C -0.169 4.169 19 H 0.061 0.939 20 H 0.105 0.895 21 H 0.044 0.956 22 H 0.110 0.890 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.266 0.734 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 13.036 1.961 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.192 4.192 4 C 0.295 3.705 5 O -0.441 6.441 6 O -0.262 6.262 7 C 0.033 3.967 8 C -0.045 4.045 9 C -0.513 4.513 10 H 0.056 0.944 11 C -0.172 4.172 12 N -0.582 5.582 13 Si 0.743 3.257 14 H -0.214 1.214 15 H -0.212 1.212 16 H -0.144 1.144 17 C -0.192 4.192 18 C -0.207 4.207 19 H 0.080 0.920 20 H 0.124 0.876 21 H 0.064 0.936 22 H 0.128 0.872 23 H 0.082 0.918 24 H 0.124 0.876 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.354 12.866 2.241 13.766 hybrid contribution -0.524 -0.938 0.525 1.196 sum -4.878 11.928 2.766 13.180 Atomic orbital electron populations 1.21780 0.90804 1.02466 1.04277 1.21241 0.98461 0.98171 0.92944 1.21768 1.01984 0.91288 1.04179 1.24885 0.77905 0.76083 0.91663 1.90562 1.57703 1.61597 1.34190 1.86617 1.40085 1.56755 1.42713 1.22793 0.96731 0.92485 0.84648 1.19248 0.88169 0.98771 0.98336 1.20384 1.26970 1.00701 1.03199 0.94402 1.25670 0.97109 0.95517 0.98953 1.70006 1.42731 1.10586 1.34926 0.86220 0.79001 0.77676 0.82789 1.21351 1.21213 1.14436 1.22853 0.98387 0.95853 1.02140 1.23143 1.03528 1.00809 0.93206 0.91961 0.87600 0.93631 0.87151 0.91790 0.87637 0.92308 0.94321 0.91069 0.92450 0.89570 0.87958 0.88199 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.83 71.99 0.64 -2.46 16 2 C -0.09 -2.37 3.35 -11.54 -0.04 -2.41 16 3 C -0.14 -2.70 9.18 71.98 0.66 -2.04 16 4 C 0.45 17.02 6.97 71.23 0.50 17.51 16 5 O -0.55 -22.99 15.94 21.95 0.35 -22.64 16 6 O -0.35 -15.14 10.15 -51.37 -0.52 -15.66 16 7 C 0.11 4.78 4.94 71.98 0.36 5.14 16 8 C -0.04 -2.06 1.06 -52.93 -0.06 -2.11 16 9 C -0.47 -27.15 9.35 25.60 0.24 -26.91 16 10 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 11 C 0.03 1.49 5.47 84.66 0.46 1.95 16 12 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 13 Si 0.92 44.80 24.77 68.60 1.70 46.50 16 14 H -0.29 -14.23 7.03 99.48 0.70 -13.53 16 15 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.22 -9.66 5.92 99.48 0.59 -9.07 16 17 C -0.16 -5.95 9.96 30.62 0.30 -5.65 16 18 C -0.17 -6.62 8.34 30.62 0.26 -6.36 16 19 H 0.06 1.48 7.86 -2.39 -0.02 1.46 16 20 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.86 4.69 -2.39 -0.01 1.85 16 27 H 0.07 2.83 7.99 -2.39 -0.02 2.81 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 31 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 32 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -69.20 270.64 6.10 -63.10 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.96 Total: 10.75 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.32 Total: -23.34 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.30 Total: -58.71 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.17 Total: -38.30 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.70 Total: 46.50 kcal Total: -69.20 6.10 -63.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308277768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.137 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds