Wall clock time and date at job start Sun Mar 29 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 115.54685 * 2 1 4 4 C 1.34775 * 119.99849 * 294.61850 * 3 2 1 5 5 O 1.21587 * 120.00387 * 354.94799 * 4 3 2 6 6 N 1.34781 * 119.99702 * 174.95140 * 4 3 2 7 7 C 1.46493 * 119.99856 * 179.72071 * 6 4 3 8 8 C 1.53002 * 109.47089 * 180.27178 * 7 6 4 9 9 C 1.50699 * 109.47034 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00235 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00112 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00330 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99761 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47225 * 90.00198 * 13 11 9 15 15 H 1.48499 * 109.47302 * 210.00103 * 13 11 9 16 16 H 1.48504 * 109.47198 * 330.00185 * 13 11 9 17 17 C 1.52997 * 117.49989 * 145.66803 * 2 1 3 18 18 C 1.52996 * 117.49642 * 214.32889 * 2 1 3 19 19 H 1.09004 * 109.47224 * 65.41158 * 1 2 3 20 20 H 1.09004 * 109.47424 * 185.41580 * 1 2 3 21 21 H 1.09000 * 109.47378 * 305.41585 * 1 2 3 22 22 H 0.96996 * 119.99613 * 114.62012 * 3 2 1 23 23 H 0.96999 * 119.99804 * 359.97438 * 6 4 3 24 24 H 1.08994 * 109.47792 * 300.27578 * 7 6 4 25 25 H 1.09004 * 109.46800 * 60.27670 * 7 6 4 26 26 H 1.08995 * 109.47447 * 300.00093 * 8 7 6 27 27 H 1.09004 * 109.46898 * 60.00552 * 8 7 6 28 28 H 0.96998 * 119.99762 * 179.97438 * 12 11 9 29 29 H 1.08993 * 117.49885 * 215.00229 * 17 2 1 30 30 H 1.09005 * 117.49506 * 0.02632 * 17 2 1 31 31 H 1.08996 * 117.49922 * 359.97438 * 18 2 1 32 32 H 1.09006 * 117.49455 * 145.00088 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1618 1.3218 0.0000 4 6 2.0137 2.1395 -1.0611 5 8 1.4341 1.7467 -2.0552 6 7 2.5082 3.3926 -1.0203 7 6 2.3526 4.2794 -2.1760 8 6 3.0038 5.6304 -1.8735 9 6 2.8432 6.5428 -3.0621 10 1 2.3278 6.1941 -3.9449 11 6 3.3543 7.8228 -3.0227 12 7 3.2146 8.6189 -4.0602 13 14 4.2452 8.4261 -1.4957 14 1 5.6931 8.1182 -1.6133 15 1 4.0604 9.8935 -1.3622 16 1 3.6902 7.7463 -0.2978 17 6 2.2365 -1.1207 0.7654 18 6 2.2364 -1.1207 -0.7653 19 1 -0.3634 0.4276 -0.9345 20 1 -0.3634 -1.0231 0.0970 21 1 -0.3634 0.5955 0.8375 22 1 2.6867 1.6084 0.7637 23 1 2.9702 3.7061 -0.2272 24 1 2.8331 3.8309 -3.0455 25 1 1.2921 4.4252 -2.3818 26 1 2.5233 6.0789 -1.0041 27 1 4.0643 5.4846 -1.6677 28 1 3.5739 9.5194 -4.0323 29 1 3.1713 -0.8746 1.2689 30 1 1.6111 -1.8582 1.2686 31 1 1.6111 -1.8583 -1.2685 32 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308307656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:04 Heat of formation + Delta-G solvation = -39.833903 kcal Electronic energy + Delta-G solvation = -13771.862554 eV Core-core repulsion = 11345.989206 eV Total energy + Delta-G solvation = -2425.873348 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14488 -38.66264 -36.49735 -34.83741 -33.81064 -31.60632 -29.38909 -26.77335 -23.53364 -22.94775 -22.34088 -20.71126 -19.40028 -18.86544 -17.38064 -16.67688 -16.31245 -16.00664 -15.55737 -15.25327 -14.84246 -14.58550 -14.00061 -13.49688 -13.34008 -13.24096 -13.03314 -12.38097 -12.17615 -12.15722 -11.77341 -11.73173 -11.52403 -11.32070 -10.82314 -10.78448 -10.25759 -9.71123 -8.29631 -6.37029 1.39364 1.42251 1.53528 1.68227 2.17277 2.37391 2.83381 3.05440 3.30373 3.75808 3.97265 4.05308 4.34607 4.44927 4.64015 4.75527 4.75823 4.83223 4.87387 5.01850 5.15339 5.23136 5.28448 5.41501 5.45812 5.66114 5.70190 6.04130 6.23710 6.70284 7.17182 7.27528 7.64745 8.87346 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.066970 B = 0.005456 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.000254 B = 5130.746915 C = 5329.606910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.091 3.909 3 N -0.705 5.705 4 C 0.698 3.302 5 O -0.632 6.632 6 N -0.733 5.733 7 C 0.166 3.834 8 C -0.011 4.011 9 C -0.540 4.540 10 H 0.028 0.972 11 C 0.004 3.996 12 N -0.951 5.951 13 Si 0.961 3.039 14 H -0.265 1.265 15 H -0.286 1.286 16 H -0.237 1.237 17 C -0.134 4.134 18 C -0.191 4.191 19 H 0.036 0.964 20 H 0.090 0.910 21 H 0.065 0.935 22 H 0.412 0.588 23 H 0.410 0.590 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.268 0.732 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -17.504 16.227 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 N -0.361 5.361 4 C 0.398 3.602 5 O -0.513 6.513 6 N -0.389 5.389 7 C 0.041 3.959 8 C -0.049 4.049 9 C -0.578 4.578 10 H 0.046 0.954 11 C -0.193 4.193 12 N -0.591 5.591 13 Si 0.783 3.217 14 H -0.190 1.190 15 H -0.212 1.212 16 H -0.160 1.160 17 C -0.171 4.171 18 C -0.229 4.229 19 H 0.055 0.945 20 H 0.109 0.891 21 H 0.084 0.916 22 H 0.250 0.750 23 H 0.245 0.755 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.147 0.853 31 H 0.122 0.878 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.389 -17.671 15.263 23.353 hybrid contribution 0.684 1.083 0.246 1.304 sum 0.295 -16.588 15.509 22.711 Atomic orbital electron populations 1.21466 0.91441 1.03337 1.01464 1.20641 0.92321 0.78738 1.08012 1.44325 1.56786 1.15773 1.19239 1.16200 0.79425 0.81047 0.83531 1.90870 1.49921 1.76426 1.34099 1.45138 1.61868 1.11890 1.19983 1.20852 0.99223 0.89182 0.86653 1.19639 0.96953 0.91696 0.96582 1.21255 1.37086 0.98417 1.01082 0.95379 1.26083 0.96492 0.96533 1.00147 1.70078 1.47682 1.08582 1.32782 0.85518 0.79143 0.77337 0.79736 1.18966 1.21216 1.16001 1.23487 1.02536 0.97694 0.93413 1.23361 1.02437 1.01356 0.95779 0.94464 0.89106 0.91562 0.75046 0.75453 0.94252 0.94205 0.94461 0.94610 0.92305 0.86946 0.85272 0.87770 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.69 71.98 0.70 -1.82 16 2 C 0.09 1.92 2.25 3.60 0.01 1.92 16 3 N -0.71 -16.64 5.46 -438.01 -2.39 -19.03 16 4 C 0.70 23.73 8.42 179.05 1.51 25.24 16 5 O -0.63 -27.59 15.49 -3.99 -0.06 -27.65 16 6 N -0.73 -24.09 5.56 -478.54 -2.66 -26.75 16 7 C 0.17 7.02 5.61 86.38 0.48 7.50 16 8 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 9 C -0.54 -31.25 9.66 25.60 0.25 -31.00 16 10 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 11 C 0.00 0.26 5.47 84.66 0.46 0.72 16 12 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 13 Si 0.96 42.47 27.47 68.60 1.88 44.35 16 14 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 15 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 17 C -0.13 -1.74 10.15 30.62 0.31 -1.43 16 18 C -0.19 -3.86 10.18 30.62 0.31 -3.55 16 19 H 0.04 1.07 7.35 -2.39 -0.02 1.05 16 20 H 0.09 1.39 8.09 -2.38 -0.02 1.37 16 21 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.41 6.74 8.85 -92.71 -0.82 5.91 16 23 H 0.41 10.33 8.49 -92.71 -0.79 9.54 16 24 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.04 1.83 8.14 -2.38 -0.02 1.82 16 26 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 27 H 0.04 1.50 7.57 -2.38 -0.02 1.48 16 28 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -74.61 275.12 0.68 -73.93 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.54 Total: 17.39 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 4.15 Total: -2.78 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -4.75 Total: -105.24 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.06 Total: -27.65 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Total: -74.61 0.68 -73.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308307656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.095 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds