Wall clock time and date at job start Sun Mar 29 2020 22:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99842 * 2 1 4 4 C 1.50700 * 109.47191 * 66.04419 * 3 2 1 5 5 H 1.08002 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00083 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00147 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00278 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47228 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.46793 * 300.00001 * 8 6 4 11 11 H 1.48500 * 109.47000 * 60.00094 * 8 6 4 12 12 C 1.46899 * 111.00141 * 236.04457 * 2 1 3 13 13 C 1.53000 * 109.46953 * 293.95589 * 12 2 1 14 14 H 1.08998 * 110.21509 * 64.29932 * 13 12 2 15 15 C 1.54481 * 110.24356 * 186.22572 * 13 12 2 16 16 C 1.54632 * 101.76330 * 93.58497 * 15 13 12 17 17 C 1.51282 * 104.19421 * 24.79546 * 16 15 13 18 18 O 1.21288 * 124.94326 * 163.72209 * 17 16 15 19 19 N 1.34622 * 110.15252 * 343.77176 * 17 16 15 20 20 H 1.08999 * 109.47291 * 60.00141 * 1 2 3 21 21 H 1.09003 * 109.47182 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47452 * 300.00390 * 1 2 3 23 23 H 1.08994 * 109.47225 * 306.04646 * 3 2 1 24 24 H 1.08998 * 109.47151 * 186.04471 * 3 2 1 25 25 H 0.97005 * 119.99661 * 359.97438 * 7 6 4 26 26 H 1.08996 * 109.46650 * 53.95370 * 12 2 1 27 27 H 1.08996 * 109.47059 * 173.95504 * 12 2 1 28 28 H 1.09002 * 110.96919 * 211.69963 * 15 13 12 29 29 H 1.08999 * 110.96847 * 335.43242 * 15 13 12 30 30 H 1.09001 * 110.49057 * 143.47534 * 16 15 13 31 31 H 1.08997 * 110.48649 * 266.12344 * 16 15 13 32 32 H 0.96998 * 124.47099 * 179.53880 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0275 3.3492 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5837 4.1866 3.1386 9 1 2.1168 5.5725 3.1390 10 1 0.1065 4.2238 3.2863 11 1 2.1755 3.4288 4.2704 12 6 1.9955 -0.7660 -1.1375 13 6 1.6314 -2.2426 -0.9703 14 1 0.5496 -2.3703 -1.0070 15 6 2.3073 -3.0880 -2.0726 16 6 3.6112 -3.5351 -1.3720 17 6 3.2775 -3.4809 0.1026 18 8 3.9220 -4.0143 0.9807 19 7 2.1606 -2.7555 0.2989 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.5611 1.9274 -0.8309 24 1 3.0797 1.3445 -0.1082 25 1 2.9435 3.5666 -0.2204 26 1 1.5611 -0.3872 -2.0627 27 1 3.0797 -0.6611 -1.1755 28 1 1.6919 -3.9479 -2.3370 29 1 2.5244 -2.4810 -2.9515 30 1 3.8736 -4.5512 -1.6667 31 1 4.4243 -2.8475 -1.6045 32 1 1.7571 -2.5926 1.1659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379362348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:59 Heat of formation + Delta-G solvation = -41.041571 kcal Electronic energy + Delta-G solvation = -14317.339170 eV Core-core repulsion = 11891.413454 eV Total energy + Delta-G solvation = -2425.925716 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20152 -37.25703 -35.59311 -32.75958 -31.16400 -29.01044 -26.86430 -25.68114 -23.35655 -21.26479 -20.66509 -19.97932 -17.26115 -16.81415 -15.87311 -15.19132 -14.82457 -14.30502 -13.79687 -13.60462 -13.44862 -13.29706 -12.63696 -12.28468 -12.17705 -11.60625 -11.53416 -11.10660 -10.92969 -10.86157 -10.66494 -10.38400 -10.08683 -9.68027 -8.95613 -8.62111 -8.41242 -7.44043 -6.40505 -4.09700 2.80803 3.42495 3.45673 3.62253 3.63658 4.29117 4.47602 4.52149 4.74615 4.89243 5.15191 5.34160 5.37129 5.41967 5.59965 5.73027 5.82079 5.83137 5.97477 6.09474 6.18373 6.55860 6.90512 7.00582 7.06287 7.31839 7.69848 7.87583 8.25349 8.49596 8.52743 8.82589 9.60937 10.98668 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042701 B = 0.007158 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.564207 B = 3910.730112 C = 4101.088415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.532 5.532 3 C 0.184 3.816 4 C -0.589 4.589 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.913 5.913 8 Si 1.072 2.928 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.040 3.960 13 C 0.134 3.866 14 H 0.085 0.915 15 C -0.128 4.128 16 C -0.156 4.156 17 C 0.517 3.483 18 O -0.548 6.548 19 N -0.704 5.704 20 H 0.013 0.987 21 H 0.046 0.954 22 H 0.075 0.925 23 H -0.019 1.019 24 H 0.019 0.981 25 H 0.266 0.734 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 -12.048 -6.728 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.256 5.256 3 C 0.059 3.941 4 C -0.628 4.628 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.550 5.550 8 Si 0.900 3.100 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.213 1.213 12 C -0.090 4.090 13 C 0.027 3.973 14 H 0.103 0.897 15 C -0.166 4.166 16 C -0.196 4.196 17 C 0.303 3.697 18 O -0.426 6.426 19 N -0.358 5.358 20 H 0.031 0.969 21 H 0.064 0.936 22 H 0.094 0.906 23 H -0.002 1.002 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.842 -11.137 -5.099 12.574 hybrid contribution -0.621 -0.797 -1.352 1.688 sum -3.464 -11.933 -6.451 14.001 Atomic orbital electron populations 1.22275 0.88749 0.99160 1.01184 1.62008 1.06922 1.17238 1.39389 1.19827 0.94608 0.82690 0.97005 1.21951 1.38926 0.99720 1.02160 0.92488 1.25862 0.94381 0.94746 1.03977 1.70808 1.36470 1.39898 1.07808 0.83489 0.76019 0.76122 0.74337 1.20799 1.21474 1.21345 1.22545 1.00706 0.92469 0.93310 1.21708 0.98629 0.93499 0.83423 0.89685 1.22625 0.95971 1.00094 0.97944 1.22321 0.99437 1.04315 0.93532 1.20889 0.80137 0.77502 0.91210 1.90727 1.53746 1.48470 1.49647 1.46120 1.27957 1.51514 1.10172 0.96894 0.93574 0.90603 1.00174 0.96334 0.92391 0.94702 0.91065 0.90006 0.89191 0.88428 0.87931 0.74567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.17 60.06 0.55 1.18 16 2 N -0.53 -10.79 4.56 -244.37 -1.12 -11.90 16 3 C 0.18 4.68 4.03 -4.97 -0.02 4.66 16 4 C -0.59 -16.59 8.51 -34.44 -0.29 -16.88 16 5 H 0.06 1.60 7.10 -52.49 -0.37 1.23 16 6 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 7 N -0.91 -27.81 13.65 55.43 0.76 -27.05 16 8 Si 1.07 25.35 29.90 -169.99 -5.08 20.27 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.04 0.63 4.57 -3.82 -0.02 0.61 16 13 C 0.13 1.66 3.27 -67.01 -0.22 1.44 16 14 H 0.09 0.96 6.72 -51.93 -0.35 0.61 16 15 C -0.13 -1.19 6.70 -25.10 -0.17 -1.36 16 16 C -0.16 -1.72 6.86 -26.74 -0.18 -1.91 16 17 C 0.52 8.08 8.44 -10.77 -0.09 7.99 16 18 O -0.55 -10.87 18.03 5.55 0.10 -10.77 16 19 N -0.70 -10.28 5.70 -52.71 -0.30 -10.58 16 20 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 21 H 0.05 0.67 6.40 -51.93 -0.33 0.34 16 22 H 0.08 1.52 6.86 -51.93 -0.36 1.16 16 23 H -0.02 -0.52 7.99 -51.93 -0.41 -0.93 16 24 H 0.02 0.51 7.80 -51.93 -0.40 0.10 16 25 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 26 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 27 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.72 7.89 -51.93 -0.41 0.31 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.42 6.33 8.96 -40.82 -0.37 5.96 16 LS Contribution 265.74 15.07 4.00 4.00 Total: -1.00 -33.12 265.74 -6.80 -39.91 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.62 Total: 0.08 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.54 Total: -3.96 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.66 Total: -49.53 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.10 Total: -10.77 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.12 -6.80 -39.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379362348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.128 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds