Wall clock time and date at job start Sun Mar 29 2020 21:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 110.43332 * 2 1 4 4 C 1.54270 * 110.48460 * 122.54145 * 2 1 3 5 5 C 1.53877 * 106.59634 * 142.28621 * 4 2 1 6 6 C 1.54268 * 106.59807 * 0.02562 * 5 4 2 7 7 H 1.09002 * 110.48234 * 95.19990 * 6 5 4 8 8 C 1.53004 * 110.48272 * 217.70679 * 6 5 4 9 9 C 1.50693 * 109.47220 * 291.75862 * 8 6 5 10 10 O 1.21213 * 120.00493 * 0.02562 * 9 8 6 11 11 O 1.34310 * 119.99805 * 179.72718 * 9 8 6 12 12 C 1.34922 * 117.00349 * 180.27868 * 11 9 8 13 13 H 1.08003 * 119.99659 * 359.97438 * 12 11 9 14 14 C 1.38755 * 120.00272 * 179.97438 * 12 11 9 15 15 N 1.31440 * 119.99938 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 119.99861 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47399 * 89.99829 * 16 14 12 18 18 H 1.48510 * 109.47111 * 209.99773 * 16 14 12 19 19 H 1.48501 * 109.47357 * 329.99520 * 16 14 12 20 20 C 1.54886 * 104.31362 * 336.45663 * 6 5 4 21 21 H 1.09002 * 109.47734 * 298.91258 * 1 2 3 22 22 H 1.09003 * 109.47192 * 58.91348 * 1 2 3 23 23 H 1.08999 * 109.47570 * 178.91180 * 1 2 3 24 24 H 1.09002 * 110.03037 * 23.00505 * 4 2 1 25 25 H 1.08998 * 110.07430 * 261.59166 * 4 2 1 26 26 H 1.09001 * 110.03261 * 240.71566 * 5 4 2 27 27 H 1.08999 * 110.02693 * 119.28725 * 5 4 2 28 28 H 1.09004 * 109.46515 * 171.75667 * 8 6 5 29 29 H 1.08994 * 109.46849 * 51.76285 * 8 6 5 30 30 H 0.97002 * 119.99938 * 180.02562 * 15 14 12 31 31 H 1.09004 * 110.75641 * 156.19518 * 20 6 5 32 32 H 1.09005 * 110.75260 * 279.56104 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0698 -0.7774 1.2183 5 6 3.3165 -1.5397 0.7360 6 6 3.4910 -1.1984 -0.7584 7 1 4.1920 -0.3729 -0.8817 8 6 3.9695 -2.4264 -1.5356 9 6 5.3779 -2.7660 -1.1209 10 8 5.9428 -2.0930 -0.2859 11 8 6.0050 -3.8181 -1.6720 12 6 7.2622 -4.0706 -1.2523 13 1 7.7194 -3.4383 -0.5056 14 6 7.9676 -5.1426 -1.7800 15 7 9.1925 -5.3883 -1.3715 16 14 7.1770 -6.2358 -3.0719 17 1 7.4715 -5.6968 -4.4239 18 1 7.7236 -7.6119 -2.9578 19 1 5.7074 -6.2679 -2.8612 20 6 2.0740 -0.7805 -1.2237 21 1 -0.3634 0.4968 0.8996 22 1 -0.3634 0.5306 -0.8801 23 1 -0.3634 -1.0274 -0.0195 24 1 1.3175 -1.4803 1.5759 25 1 2.3410 -0.0839 2.0143 26 1 3.1691 -2.6126 0.8596 27 1 4.1927 -1.2156 1.2974 28 1 3.9471 -2.2114 -2.6040 29 1 3.3140 -3.2703 -1.3210 30 1 9.6858 -6.1375 -1.7406 31 1 2.1299 -0.1368 -2.1017 32 1 1.4592 -1.6577 -1.4250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388762531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:44 Heat of formation + Delta-G solvation = -110.110787 kcal Electronic energy + Delta-G solvation = -14116.308483 eV Core-core repulsion = 11655.094949 eV Total energy + Delta-G solvation = -2461.213533 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41975 -38.15238 -35.30391 -32.42379 -32.20223 -29.54608 -27.42608 -25.31995 -23.82137 -20.42464 -19.97403 -18.93421 -17.88980 -16.54788 -16.03582 -14.93787 -14.77779 -14.28354 -13.86098 -13.34535 -13.30695 -12.98163 -12.39494 -12.25371 -12.00450 -11.69076 -11.13624 -10.89480 -10.74365 -10.61314 -10.54774 -10.47353 -10.33855 -10.27703 -10.11946 -9.64677 -9.02260 -8.63000 -6.31839 -4.07084 3.18883 3.26772 3.39401 3.49258 4.19125 4.29622 4.66890 4.72761 4.87435 5.14475 5.27898 5.39919 5.51285 5.54422 5.65157 5.71669 5.73715 5.82933 5.90731 5.97879 6.04014 6.14325 6.19994 6.29324 6.43172 6.56383 6.66027 6.71326 7.81779 8.09492 8.70331 9.07659 9.77220 10.77125 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.064556 B = 0.006489 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.630123 B = 4313.704987 C = 4568.690671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.076 4.076 7 H 0.082 0.918 8 C -0.099 4.099 9 C 0.409 3.591 10 O -0.538 6.538 11 O -0.257 6.257 12 C -0.380 4.380 13 H 0.108 0.892 14 C 0.064 3.936 15 N -0.879 5.879 16 Si 0.905 3.095 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.261 1.261 20 C -0.116 4.116 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.278 0.722 31 H 0.065 0.935 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 6.986 -0.252 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.094 4.094 7 H 0.100 0.900 8 C -0.137 4.137 9 C 0.255 3.745 10 O -0.432 6.432 11 O -0.166 6.166 12 C -0.456 4.456 13 H 0.126 0.874 14 C -0.139 4.139 15 N -0.518 5.518 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.153 4.153 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.798 7.007 -0.049 17.282 hybrid contribution -0.034 -0.597 -0.526 0.797 sum -15.831 6.410 -0.575 17.089 Atomic orbital electron populations 1.21802 0.95341 1.01650 1.01228 1.21968 0.95030 0.99323 0.95325 0.90991 1.22242 0.97554 0.98719 0.97283 1.22159 0.97615 0.99931 0.95632 1.21752 0.95989 0.96897 0.94808 0.89997 1.21245 0.91779 0.99072 1.01638 1.23088 0.88910 0.80525 0.82015 1.90578 1.67841 1.51532 1.33279 1.83533 1.29625 1.43718 1.59759 1.20643 0.85898 1.14630 1.24447 0.87441 1.24545 0.94865 0.96676 0.97822 1.69613 1.09754 1.29780 1.42686 0.86219 0.80467 0.79083 0.81161 1.19940 1.20844 1.18476 1.22659 0.95756 0.99676 0.97224 0.92972 0.92921 0.92680 0.92121 0.92258 0.92144 0.90832 0.89154 0.89131 0.91160 0.91653 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.11 37.16 0.34 -0.93 16 2 C -0.10 -1.05 3.45 -88.90 -0.31 -1.35 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.12 -1.43 6.38 -25.61 -0.16 -1.59 16 5 C -0.12 -1.75 5.48 -25.61 -0.14 -1.89 16 6 C -0.08 -1.13 2.46 -88.96 -0.22 -1.35 16 7 H 0.08 1.34 7.96 -51.93 -0.41 0.92 16 8 C -0.10 -1.67 5.20 -27.88 -0.15 -1.82 16 9 C 0.41 9.68 7.70 36.00 0.28 9.95 16 10 O -0.54 -14.19 14.13 -19.05 -0.27 -14.46 16 11 O -0.26 -6.94 8.58 -20.71 -0.18 -7.12 16 12 C -0.38 -11.56 10.10 30.92 0.31 -11.25 16 13 H 0.11 3.59 7.09 -52.48 -0.37 3.22 16 14 C 0.06 1.87 5.49 -17.53 -0.10 1.77 16 15 N -0.88 -26.54 13.96 55.48 0.77 -25.76 16 16 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.12 -1.32 5.77 -24.68 -0.14 -1.47 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 27 H 0.07 1.27 7.68 -51.93 -0.40 0.88 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.37 8.01 -51.93 -0.42 0.96 16 30 H 0.28 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 LS Contribution 267.34 15.07 4.03 4.03 Total: -1.00 -32.24 267.34 -5.71 -37.95 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.92 Total: -1.67 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.28 Total: -9.92 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.77 Total: -25.76 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.45 Total: -21.58 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.24 -5.71 -37.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388762531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.156 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds