Wall clock time and date at job start Sun Mar 29 2020 22:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46721 * 305.00148 * 3 2 1 5 5 C 1.50694 * 109.47355 * 184.99859 * 3 2 1 6 6 H 1.08000 * 120.00563 * 239.99848 * 5 3 2 7 7 C 1.37885 * 119.99902 * 60.00012 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46903 * 109.47096 * 64.99801 * 3 2 1 14 14 C 1.48527 * 110.99982 * 62.60551 * 13 3 2 15 15 C 1.54937 * 103.22781 * 159.71801 * 14 13 3 16 16 C 1.54589 * 102.92238 * 322.59126 * 15 14 13 17 17 C 1.52998 * 110.31322 * 140.87037 * 16 15 14 18 18 N 1.46904 * 110.30592 * 263.03720 * 16 15 14 19 19 C 1.47900 * 111.00005 * 180.02562 * 13 3 2 20 20 H 1.08992 * 109.46922 * 299.99976 * 1 2 3 21 21 H 1.08997 * 109.46919 * 60.00309 * 1 2 3 22 22 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47496 * 240.00053 * 2 1 3 24 24 H 1.09002 * 109.47332 * 119.99482 * 2 1 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 26 26 H 1.09004 * 110.67014 * 278.15529 * 14 13 3 27 27 H 1.09001 * 110.66429 * 41.28497 * 14 13 3 28 28 H 1.09001 * 110.72470 * 204.22748 * 15 14 13 29 29 H 1.09008 * 110.87399 * 81.01540 * 15 14 13 30 30 H 1.08993 * 109.47375 * 304.28352 * 17 16 15 31 31 H 1.09002 * 109.46940 * 64.28469 * 17 16 15 32 32 H 1.09002 * 109.47698 * 184.28000 * 17 16 15 33 33 H 1.00903 * 111.00303 * 295.71440 * 18 16 15 34 34 H 1.00907 * 110.99896 * 59.67250 * 18 16 15 35 35 H 1.09001 * 109.91363 * 333.50978 * 19 13 3 36 36 H 1.09000 * 109.91732 * 94.60477 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.3979 0.2167 -2.6503 11 1 6.4994 2.2815 -1.3821 12 1 6.5975 0.1474 -0.2348 13 7 1.6514 2.0993 1.2552 14 6 2.2773 1.4282 2.4231 15 6 2.2100 2.5090 3.5312 16 6 2.4843 3.8175 2.7549 17 6 1.5959 4.9451 3.2840 18 7 3.9013 4.1886 2.8660 19 6 2.1280 3.4989 1.2907 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8294 -0.0612 -2.9498 26 1 1.7061 0.5456 2.7114 27 1 3.3122 1.1639 2.2058 28 1 2.9797 2.3383 4.2838 29 1 1.2218 2.5332 3.9907 30 1 0.5509 4.6400 3.2302 31 1 1.8590 5.1594 4.3198 32 1 1.7448 5.8395 2.6789 33 1 4.1460 4.3998 3.8218 34 1 4.4954 3.4635 2.4923 35 1 3.0117 3.6063 0.6617 36 1 1.3411 4.1681 0.9426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405814223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:05 Heat of formation + Delta-G solvation = -5.418022 kcal Electronic energy + Delta-G solvation = -15326.014013 eV Core-core repulsion = 13037.466144 eV Total energy + Delta-G solvation = -2288.547869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.94259 -35.26092 -32.35186 -31.09991 -29.07837 -28.79243 -26.45240 -24.69039 -22.74345 -21.25727 -19.02561 -18.77168 -16.42301 -15.41721 -15.21448 -14.65435 -14.21706 -13.65331 -13.00632 -12.76278 -12.65432 -12.36278 -12.07714 -11.66279 -11.43243 -11.20840 -10.91840 -10.80675 -10.69841 -10.58589 -10.36678 -10.17125 -9.95184 -9.64888 -9.42872 -9.05228 -8.35408 -8.27887 -7.16677 -5.98413 -4.11326 3.28020 3.33356 3.35834 4.39493 4.80219 5.14510 5.24638 5.27558 5.36908 5.51709 5.89469 5.95981 6.01410 6.21165 6.33675 6.37221 6.38718 6.48166 6.60318 6.69098 6.78401 6.80847 6.86320 7.08507 7.19966 7.29415 7.56200 7.60917 7.76252 7.80072 7.99737 8.15851 8.28019 8.44877 8.98194 9.55131 11.00939 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.012529 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.678841 B = 2234.225692 C = 2941.868709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.287 1.287 11 H -0.276 1.276 12 H -0.279 1.279 13 N -0.515 5.515 14 C 0.041 3.959 15 C -0.155 4.155 16 C 0.106 3.894 17 C -0.128 4.128 18 N -0.837 5.837 19 C 0.048 3.952 20 H 0.047 0.953 21 H 0.039 0.961 22 H 0.025 0.975 23 H 0.092 0.908 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.330 0.670 34 H 0.345 0.655 35 H 0.070 0.930 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 3.618 8.688 9.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.097 3.903 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.213 1.213 11 H -0.202 1.202 12 H -0.205 1.205 13 N -0.239 5.239 14 C -0.087 4.087 15 C -0.195 4.195 16 C 0.012 3.988 17 C -0.186 4.186 18 N -0.367 5.367 19 C -0.081 4.081 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.110 0.890 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.671 4.109 8.012 9.392 hybrid contribution 2.082 -0.941 0.380 2.316 sum -0.589 3.168 8.392 8.990 Atomic orbital electron populations 1.21714 0.98892 0.98380 1.00601 1.21569 0.92227 0.99162 1.01871 1.19404 0.93111 0.91244 0.86510 0.94405 1.21645 0.92708 1.38138 1.05490 0.92538 1.24912 0.97770 0.95042 0.95693 1.69867 1.34869 1.38144 1.09395 0.86747 0.86223 0.78285 0.77298 1.21305 1.20200 1.20454 1.65130 1.53619 1.00970 1.04211 1.23036 0.99174 0.95993 0.90496 1.23360 1.01112 0.97189 0.97833 1.21670 0.88037 0.92756 0.96292 1.21746 0.98912 0.98125 0.99805 1.58954 1.03646 1.49336 1.24757 1.22800 0.99957 0.91689 0.93639 0.93434 0.94171 0.95632 0.89004 0.95133 0.92851 0.91840 0.92556 0.92732 0.91458 0.92097 0.93635 0.92318 0.85819 0.84147 0.91160 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.61 5.14 -26.73 -0.14 -2.75 16 3 C 0.20 5.02 1.81 -68.87 -0.12 4.90 16 4 H 0.04 1.05 8.14 -51.92 -0.42 0.63 16 5 C -0.54 -14.16 6.34 -34.44 -0.22 -14.38 16 6 H 0.06 1.46 6.03 -52.49 -0.32 1.15 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.77 11.29 55.43 0.63 -24.14 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -10.91 4.76 -223.87 -1.06 -11.97 16 14 C 0.04 0.80 5.29 -1.90 -0.01 0.79 16 15 C -0.15 -2.46 6.31 -24.87 -0.16 -2.62 16 16 C 0.11 1.71 1.19 -130.23 -0.16 1.56 16 17 C -0.13 -1.78 8.51 37.16 0.32 -1.46 16 18 N -0.84 -12.95 8.81 1.84 0.02 -12.93 16 19 C 0.05 0.95 5.75 -2.74 -0.02 0.94 16 20 H 0.05 0.95 7.75 -51.93 -0.40 0.54 16 21 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 24 H 0.03 0.71 6.76 -51.93 -0.35 0.36 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.06 1.22 7.55 -51.93 -0.39 0.82 16 27 H 0.06 1.20 6.07 -51.93 -0.31 0.89 16 28 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.07 1.02 7.84 -51.92 -0.41 0.62 16 30 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.33 4.27 9.03 -39.29 -0.35 3.91 16 34 H 0.34 5.75 8.97 -39.29 -0.35 5.40 16 35 H 0.07 1.59 6.05 -51.93 -0.31 1.28 16 36 H 0.06 1.21 7.69 -51.93 -0.40 0.81 16 LS Contribution 276.05 15.07 4.16 4.16 Total: -1.00 -26.88 276.05 -7.52 -34.40 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.00 Total: 8.34 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.23 Total: -13.78 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.42 Total: -49.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.88 -7.52 -34.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405814223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.979 kcal (2) G-P(sol) polarization free energy of solvation -26.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds