Wall clock time and date at job start Sun Mar 29 2020 22:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46721 * 305.00148 * 3 2 1 5 5 C 1.50694 * 109.47355 * 184.99859 * 3 2 1 6 6 H 1.08000 * 120.00563 * 239.99848 * 5 3 2 7 7 C 1.37885 * 119.99902 * 60.00012 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46903 * 109.47096 * 64.99801 * 3 2 1 14 14 C 1.48527 * 110.99982 * 62.60551 * 13 3 2 15 15 C 1.54937 * 103.22781 * 159.71801 * 14 13 3 16 16 C 1.54589 * 102.92238 * 322.59126 * 15 14 13 17 17 C 1.52998 * 110.31322 * 140.87037 * 16 15 14 18 18 N 1.46904 * 110.30592 * 263.03720 * 16 15 14 19 19 C 1.47900 * 111.00005 * 180.02562 * 13 3 2 20 20 H 1.08992 * 109.46922 * 299.99976 * 1 2 3 21 21 H 1.08997 * 109.46919 * 60.00309 * 1 2 3 22 22 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47496 * 240.00053 * 2 1 3 24 24 H 1.09002 * 109.47332 * 119.99482 * 2 1 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 26 26 H 1.09004 * 110.67014 * 278.15529 * 14 13 3 27 27 H 1.09001 * 110.66429 * 41.28497 * 14 13 3 28 28 H 1.09001 * 110.72470 * 204.22748 * 15 14 13 29 29 H 1.09008 * 110.87399 * 81.01540 * 15 14 13 30 30 H 1.08993 * 109.47375 * 304.28352 * 17 16 15 31 31 H 1.09002 * 109.46940 * 64.28469 * 17 16 15 32 32 H 1.09002 * 109.47698 * 184.28000 * 17 16 15 33 33 H 1.00903 * 111.00303 * 295.71440 * 18 16 15 34 34 H 1.00907 * 110.99896 * 59.67250 * 18 16 15 35 35 H 1.09001 * 109.91363 * 333.50978 * 19 13 3 36 36 H 1.09000 * 109.91732 * 94.60477 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.3979 0.2167 -2.6503 11 1 6.4994 2.2815 -1.3821 12 1 6.5975 0.1474 -0.2348 13 7 1.6514 2.0993 1.2552 14 6 2.2773 1.4282 2.4231 15 6 2.2100 2.5090 3.5312 16 6 2.4843 3.8175 2.7549 17 6 1.5959 4.9451 3.2840 18 7 3.9013 4.1886 2.8660 19 6 2.1280 3.4989 1.2907 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8294 -0.0612 -2.9498 26 1 1.7061 0.5456 2.7114 27 1 3.3122 1.1639 2.2058 28 1 2.9797 2.3383 4.2838 29 1 1.2218 2.5332 3.9907 30 1 0.5509 4.6400 3.2302 31 1 1.8590 5.1594 4.3198 32 1 1.7448 5.8395 2.6789 33 1 4.1460 4.3998 3.8218 34 1 4.4954 3.4635 2.4923 35 1 3.0117 3.6063 0.6617 36 1 1.3411 4.1681 0.9426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405814223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:04 Heat of formation + Delta-G solvation = -24.357255 kcal Electronic energy + Delta-G solvation = -15326.835279 eV Core-core repulsion = 13037.466144 eV Total energy + Delta-G solvation = -2289.369135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48221 -36.94553 -34.20893 -32.85911 -30.59390 -30.05659 -28.28102 -26.31948 -24.49138 -22.91053 -20.83791 -20.18501 -18.39824 -17.13919 -16.57561 -16.23423 -15.92463 -15.21681 -14.81548 -14.30243 -14.09336 -14.00505 -13.71268 -13.17154 -13.00951 -12.81016 -12.71793 -12.47600 -12.28890 -12.22714 -11.85412 -11.80254 -11.68297 -11.51651 -11.26531 -10.93452 -10.41979 -9.52686 -8.98026 -8.02529 -6.23484 1.38440 1.39761 1.46257 2.40562 3.16416 3.43331 3.76260 3.85129 3.97013 4.19998 4.55115 4.57217 4.65379 4.72433 4.81301 4.89078 4.97695 4.99978 5.10066 5.15551 5.20951 5.28149 5.29963 5.41654 5.44267 5.48446 5.61774 5.77325 6.03936 6.18013 6.21994 6.42915 6.56957 6.68266 6.96746 7.45909 8.93284 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.012529 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.678841 B = 2234.225692 C = 2941.868709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C 0.211 3.789 4 H -0.003 1.003 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.946 3.054 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.272 1.272 13 N -0.514 5.514 14 C 0.040 3.960 15 C -0.141 4.141 16 C 0.111 3.889 17 C -0.122 4.122 18 N -0.840 5.840 19 C 0.046 3.954 20 H 0.056 0.944 21 H 0.031 0.969 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.348 0.652 34 H 0.337 0.663 35 H 0.036 0.964 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 4.123 10.763 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.103 3.897 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.773 3.227 10 H -0.212 1.212 11 H -0.200 1.200 12 H -0.197 1.197 13 N -0.238 5.238 14 C -0.088 4.088 15 C -0.181 4.181 16 C 0.018 3.982 17 C -0.180 4.180 18 N -0.371 5.371 19 C -0.083 4.083 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.149 0.851 35 H 0.055 0.945 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.588 4.629 10.118 11.424 hybrid contribution 2.035 -1.072 -0.266 2.316 sum -0.553 3.557 9.852 10.489 Atomic orbital electron populations 1.21578 0.96379 0.99823 1.00624 1.21411 0.94445 0.98137 1.00301 1.19158 0.92126 0.91491 0.86934 0.98501 1.21896 0.93723 1.37350 1.05306 0.92611 1.25630 1.01760 0.95060 0.95615 1.70005 1.36330 1.39063 1.09821 0.85791 0.81478 0.78172 0.77280 1.21244 1.20042 1.19715 1.65042 1.53708 1.01659 1.03381 1.23044 0.97557 0.97279 0.90952 1.23305 1.02797 0.95117 0.96909 1.21598 0.88936 0.94063 0.93610 1.21697 0.98488 0.96810 1.01022 1.58895 1.03072 1.48939 1.26172 1.22819 0.98458 0.90940 0.96078 0.92479 0.94967 0.93466 0.92009 0.95087 0.93049 0.91611 0.94851 0.90544 0.89917 0.91690 0.91192 0.92630 0.83787 0.85052 0.94517 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.80 71.98 0.71 -4.46 16 2 C -0.10 -5.03 5.14 30.60 0.16 -4.88 16 3 C 0.21 10.63 1.81 44.17 0.08 10.71 16 4 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 5 C -0.54 -29.09 6.34 25.60 0.16 -28.93 16 6 H 0.06 2.94 6.03 -2.91 -0.02 2.92 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -52.52 11.29 21.45 0.24 -52.28 16 9 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 N -0.51 -21.71 4.76 -862.19 -4.10 -25.81 16 14 C 0.04 1.50 5.29 86.65 0.46 1.95 16 15 C -0.14 -4.07 6.31 31.80 0.20 -3.87 16 16 C 0.11 3.36 1.19 4.41 0.01 3.36 16 17 C -0.12 -3.01 8.51 71.98 0.61 -2.40 16 18 N -0.84 -24.23 8.81 -148.08 -1.31 -25.54 16 19 C 0.05 1.81 5.75 86.46 0.50 2.31 16 20 H 0.06 2.20 7.75 -2.39 -0.02 2.18 16 21 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.06 3.37 5.95 -2.39 -0.01 3.36 16 24 H 0.03 1.45 6.76 -2.39 -0.02 1.43 16 25 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.07 2.42 7.55 -2.38 -0.02 2.40 16 27 H 0.03 1.41 6.07 -2.39 -0.01 1.39 16 28 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 29 H 0.08 2.18 7.84 -2.38 -0.02 2.16 16 30 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.35 7.89 9.03 -89.69 -0.81 7.08 16 34 H 0.34 10.81 8.97 -89.69 -0.80 10.00 16 35 H 0.04 1.69 6.05 -2.39 -0.01 1.68 16 36 H 0.06 2.40 7.69 -2.39 -0.02 2.38 16 Total: -1.00 -58.39 276.05 -0.36 -58.75 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.55 Total: 23.99 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 3.33 Total: -24.70 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -5.16 Total: -103.62 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -58.39 -0.36 -58.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405814223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.389 kcal (2) G-P(sol) polarization free energy of solvation -58.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds