Wall clock time and date at job start Sun Mar 29 2020 22:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47322 * 2 1 4 4 H 1.09001 * 109.47391 * 305.00142 * 3 2 1 5 5 C 1.50704 * 109.47313 * 184.99941 * 3 2 1 6 6 H 1.07996 * 120.00631 * 240.00539 * 5 3 2 7 7 C 1.37883 * 119.99682 * 60.00340 * 5 3 2 8 8 N 1.31513 * 119.99650 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99914 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46968 * 60.00137 * 9 7 5 11 11 H 1.48504 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47319 * 299.99745 * 9 7 5 13 13 N 1.46900 * 109.47016 * 65.00471 * 3 2 1 14 14 C 1.47448 * 111.00041 * 69.15688 * 13 3 2 15 15 C 1.54321 * 107.23159 * 123.26094 * 14 13 3 16 16 C 1.55422 * 103.04810 * 22.28093 * 15 14 13 17 17 C 1.53002 * 111.10766 * 206.29505 * 16 15 14 18 18 N 1.46904 * 111.00107 * 82.39286 * 16 15 14 19 19 C 1.47846 * 111.00020 * 189.99819 * 13 3 2 20 20 H 1.09001 * 109.46703 * 299.99724 * 1 2 3 21 21 H 1.09000 * 109.47037 * 59.99480 * 1 2 3 22 22 H 1.08999 * 109.47598 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47023 * 239.99834 * 2 1 3 24 24 H 1.08997 * 109.47525 * 120.00602 * 2 1 3 25 25 H 0.96999 * 119.99589 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.88737 * 242.66366 * 14 13 3 27 27 H 1.08997 * 109.88833 * 3.69001 * 14 13 3 28 28 H 1.09004 * 110.70290 * 140.66846 * 15 14 13 29 29 H 1.09004 * 110.70313 * 263.89914 * 15 14 13 30 30 H 1.09000 * 109.47725 * 172.16939 * 17 16 15 31 31 H 1.08998 * 109.46970 * 292.17914 * 17 16 15 32 32 H 1.09010 * 109.46460 * 52.17271 * 17 16 15 33 33 H 1.00903 * 110.99921 * 67.88512 * 18 16 15 34 34 H 1.00899 * 110.99867 * 191.83948 * 18 16 15 35 35 H 1.09002 * 110.37464 * 332.46590 * 19 13 3 36 36 H 1.08999 * 110.37318 * 94.69366 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8812 -1.3819 10 1 6.5975 0.1471 -0.2351 11 1 6.3978 0.2166 -2.6506 12 1 6.4995 2.2814 -1.3823 13 7 1.6515 2.0992 1.2553 14 6 2.3920 1.5343 2.3984 15 6 3.1265 2.7025 3.0895 16 6 2.3077 3.9455 2.6421 17 6 3.1727 5.2075 2.6512 18 7 1.1157 4.1211 3.4825 19 6 1.9143 3.5529 1.1961 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8291 -0.0609 -2.9500 26 1 1.6969 1.0684 3.0967 27 1 3.1128 0.7969 2.0453 28 1 3.0950 2.5901 4.1732 29 1 4.1559 2.7724 2.7379 30 1 2.6175 6.0319 2.2039 31 1 3.4348 5.4609 3.6785 32 1 4.0824 5.0285 2.0778 33 1 1.3718 4.3768 4.4244 34 1 0.4874 4.8011 3.0813 35 1 2.7345 3.7626 0.5095 36 1 1.0163 4.0886 0.8884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405814226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:15 Heat of formation + Delta-G solvation = -5.263334 kcal Electronic energy + Delta-G solvation = -15310.397260 eV Core-core repulsion = 13021.856099 eV Total energy + Delta-G solvation = -2288.541161 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.78759 -35.21513 -32.35033 -31.12456 -28.96399 -28.50820 -26.64757 -24.76871 -22.68077 -21.04255 -19.19846 -18.46289 -16.45706 -15.37726 -15.13209 -14.85595 -14.14822 -13.26748 -12.94344 -12.72734 -12.65379 -12.44311 -12.14873 -11.94658 -11.37698 -11.17924 -10.88426 -10.75574 -10.61459 -10.49748 -10.20421 -10.01863 -9.87579 -9.53071 -9.37253 -8.93739 -8.32751 -8.29348 -6.97600 -5.94164 -4.07296 3.28287 3.33988 3.35949 4.41363 4.82636 4.98740 5.18965 5.29567 5.43125 5.66885 5.80878 5.91632 6.08824 6.23577 6.35743 6.43243 6.46019 6.57932 6.63572 6.68637 6.79158 6.94909 7.00553 7.20346 7.28137 7.47144 7.58720 7.70089 7.76482 7.82777 8.10170 8.23874 8.42432 8.56678 9.04946 9.59146 11.04403 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.012318 C = 0.009476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.051179 B = 2272.611358 C = 2954.164553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.205 3.795 4 H 0.034 0.966 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.516 5.516 14 C 0.061 3.939 15 C -0.122 4.122 16 C 0.100 3.900 17 C -0.171 4.171 18 N -0.821 5.821 19 C 0.065 3.935 20 H 0.049 0.951 21 H 0.037 0.963 22 H 0.023 0.977 23 H 0.090 0.910 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.330 0.670 34 H 0.336 0.664 35 H 0.057 0.943 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 5.866 7.865 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.098 3.902 4 H 0.052 0.948 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.239 5.239 14 C -0.068 4.068 15 C -0.161 4.161 16 C 0.007 3.993 17 C -0.231 4.231 18 N -0.350 5.350 19 C -0.064 4.064 20 H 0.068 0.932 21 H 0.056 0.944 22 H 0.042 0.958 23 H 0.108 0.892 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.174 4.880 7.569 9.265 hybrid contribution 2.356 1.154 -0.208 2.631 sum 0.182 6.034 7.362 9.520 Atomic orbital electron populations 1.21702 0.98925 0.98284 1.00590 1.21535 0.92246 0.99130 1.01656 1.19455 0.92846 0.91388 0.86467 0.94807 1.21777 0.92839 1.37949 1.05323 0.92535 1.24930 0.97599 0.95200 0.95776 1.69873 1.34754 1.38304 1.09404 0.86783 0.86485 0.78124 0.77348 1.20354 1.21283 1.20471 1.63800 1.54212 1.01125 1.04777 1.22519 0.95485 0.96136 0.92615 1.22825 0.98359 0.95291 0.99592 1.22019 0.89312 0.93298 0.94688 1.22456 1.01090 0.98470 1.01092 1.58698 1.16427 1.55167 1.04707 1.22853 0.99186 0.91289 0.93061 0.93169 0.94427 0.95754 0.89199 0.95104 0.92913 0.92984 0.91457 0.92373 0.91760 0.93007 0.93280 0.91876 0.85852 0.85146 0.92510 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.80 37.16 0.36 -2.58 16 2 C -0.11 -2.61 5.20 -26.74 -0.14 -2.75 16 3 C 0.21 5.13 1.63 -68.86 -0.11 5.02 16 4 H 0.03 0.94 8.08 -51.93 -0.42 0.52 16 5 C -0.54 -14.32 6.22 -34.44 -0.21 -14.53 16 6 H 0.06 1.49 6.24 -52.49 -0.33 1.16 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.96 11.29 55.43 0.63 -24.34 16 9 Si 0.88 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.52 -11.22 4.59 -224.67 -1.03 -12.25 16 14 C 0.06 1.24 5.32 -2.83 -0.02 1.23 16 15 C -0.12 -2.12 5.90 -24.75 -0.15 -2.27 16 16 C 0.10 1.60 1.14 -129.31 -0.15 1.46 16 17 C -0.17 -2.35 8.94 37.16 0.33 -2.02 16 18 N -0.82 -11.59 9.07 2.58 0.02 -11.57 16 19 C 0.06 1.27 5.59 -2.30 -0.01 1.26 16 20 H 0.05 1.05 7.75 -51.93 -0.40 0.65 16 21 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 24 H 0.03 0.74 6.99 -51.93 -0.36 0.38 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.53 5.67 -51.93 -0.29 1.24 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.16 7.59 -51.93 -0.39 0.77 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.93 8.09 -51.92 -0.42 0.51 16 33 H 0.33 3.94 9.02 -39.29 -0.35 3.59 16 34 H 0.34 4.30 8.99 -39.29 -0.35 3.95 16 35 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 36 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 277.44 15.07 4.18 4.18 Total: -1.00 -27.62 277.44 -7.50 -35.11 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.09 Total: 6.27 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -0.18 Total: -13.45 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.38 Total: -48.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.62 -7.50 -35.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405814226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.851 kcal (2) G-P(sol) polarization free energy of solvation -27.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds