Wall clock time and date at job start Sun Mar 29 2020 21:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.30476 * 65.41450 * 12 11 10 14 14 C 1.52929 * 109.30041 * 185.00107 * 12 11 10 15 15 C 1.53344 * 108.67103 * 171.06204 * 14 12 11 16 16 C 1.53064 * 108.42854 * 292.46617 * 15 14 12 17 17 C 1.50182 * 109.89041 * 48.90371 * 16 15 14 18 18 O 1.21277 * 118.24535 * 162.43936 * 17 16 15 19 19 N 1.33346 * 123.50742 * 342.42133 * 17 16 15 20 20 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.00899 * 111.00283 * 303.95218 * 10 9 7 24 24 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 25 25 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 26 26 H 1.08993 * 109.59869 * 290.82166 * 14 12 11 27 27 H 1.08999 * 109.60219 * 51.14395 * 14 12 11 28 28 H 1.08997 * 109.67966 * 52.20581 * 15 14 12 29 29 H 1.09002 * 109.66992 * 172.69853 * 15 14 12 30 30 H 1.08995 * 109.40174 * 169.03191 * 16 15 14 31 31 H 1.09001 * 109.40442 * 288.77751 * 16 15 14 32 32 H 0.96999 * 117.94787 * 182.22154 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 5.4695 -2.6185 -0.0001 12 6 5.9408 -4.0741 -0.0009 13 1 5.6445 -4.5482 -0.9366 14 6 7.4644 -4.1122 0.1249 15 6 7.9024 -5.5647 0.3480 16 6 7.4053 -6.0140 1.7242 17 6 5.9520 -5.6690 1.8803 18 8 5.3203 -6.2265 2.7526 19 7 5.3192 -4.7823 1.1112 20 1 -0.4850 0.8401 -0.0004 21 1 3.8751 -0.6798 -0.8895 22 1 3.8745 -0.6810 0.8905 23 1 3.6252 -3.0957 0.7810 24 1 5.8464 -2.1145 -0.8901 25 1 5.8465 -2.1146 0.8899 26 1 7.9164 -3.7303 -0.7904 27 1 7.7769 -3.4994 0.9704 28 1 7.4701 -6.2012 -0.4241 29 1 8.9898 -5.6299 0.3107 30 1 7.5340 -7.0920 1.8215 31 1 7.9823 -5.5103 2.4998 32 1 4.3868 -4.5969 1.3039 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591763771.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:40 Heat of formation + Delta-G solvation = -47.571889 kcal Electronic energy + Delta-G solvation = -14041.911607 eV Core-core repulsion = 11615.702715 eV Total energy + Delta-G solvation = -2426.208892 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29590 -37.18496 -35.13869 -33.08127 -32.20273 -30.32729 -27.66746 -25.24765 -22.83287 -21.88183 -21.10212 -19.19736 -17.29166 -16.82686 -16.13492 -15.49362 -15.17988 -14.42546 -14.19587 -13.81103 -13.69016 -13.41387 -13.26256 -12.48629 -11.98713 -11.65193 -11.56262 -11.40172 -11.19197 -11.15446 -10.69186 -10.49297 -9.93068 -9.66460 -9.36202 -8.96350 -8.64092 -7.65982 -6.10514 -4.09536 2.71492 3.24705 3.32068 3.33304 3.35583 4.36943 4.42496 4.48717 4.59586 4.71064 5.01451 5.21439 5.22829 5.31241 5.36060 5.55217 5.57509 5.64854 5.69692 5.91358 5.97446 6.15151 6.65074 6.87198 6.92462 7.45186 7.50771 7.74826 8.11491 8.30149 8.56604 8.96872 9.50328 11.02668 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050803 B = 0.006347 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.013344 B = 4410.492358 C = 4750.123797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.165 3.835 10 N -0.680 5.680 11 C 0.043 3.957 12 C 0.141 3.859 13 H 0.084 0.916 14 C -0.133 4.133 15 C -0.122 4.122 16 C -0.135 4.135 17 C 0.516 3.484 18 O -0.566 6.566 19 N -0.710 5.710 20 H 0.265 0.735 21 H 0.025 0.975 22 H -0.014 1.014 23 H 0.331 0.669 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.722 -7.443 -0.452 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.559 4.559 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.312 5.312 11 C -0.087 4.087 12 C 0.036 3.964 13 H 0.102 0.898 14 C -0.171 4.171 15 C -0.160 4.160 16 C -0.175 4.175 17 C 0.303 3.697 18 O -0.445 6.445 19 N -0.364 5.364 20 H 0.074 0.926 21 H 0.043 0.957 22 H 0.003 0.997 23 H 0.150 0.850 24 H 0.099 0.901 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 17.409 -7.707 -0.741 19.053 hybrid contribution 0.187 1.437 0.866 1.688 sum 17.596 -6.270 0.125 18.680 Atomic orbital electron populations 1.69899 1.06177 1.26972 1.50594 1.24911 0.94769 0.98985 0.94620 0.86807 0.80197 0.83807 0.78580 1.20084 1.21140 1.19334 1.21043 0.88828 0.94924 1.51067 0.90236 1.20012 0.96821 0.84491 0.94945 1.60557 1.04103 1.17396 1.49124 1.22346 0.91419 0.93970 1.01008 1.21130 0.92462 0.93098 0.89743 0.89798 1.21931 0.94404 0.97168 1.03601 1.21649 1.01488 0.96423 0.96441 1.21638 0.92702 1.03782 0.99345 1.20164 0.90048 0.78688 0.80817 1.90756 1.67117 1.52206 1.34453 1.45728 1.15854 1.42229 1.32552 0.92556 0.95738 0.99678 0.85034 0.90066 0.95488 0.89605 0.90910 0.90973 0.90584 0.88407 0.88480 0.75903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.77 9.87 -34.44 -0.34 -15.11 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.16 3.90 4.51 -4.97 -0.02 3.88 16 10 N -0.68 -13.26 6.46 -115.05 -0.74 -14.00 16 11 C 0.04 0.64 5.42 -3.82 -0.02 0.62 16 12 C 0.14 1.68 3.38 -68.37 -0.23 1.45 16 13 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 14 C -0.13 -1.15 5.30 -26.59 -0.14 -1.29 16 15 C -0.12 -0.93 6.03 -26.52 -0.16 -1.09 16 16 C -0.13 -1.30 6.03 -28.10 -0.17 -1.47 16 17 C 0.52 7.34 7.71 -11.87 -0.09 7.25 16 18 O -0.57 -10.52 17.78 5.56 0.10 -10.42 16 19 N -0.71 -9.79 5.12 -54.85 -0.28 -10.07 16 20 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 21 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 22 H -0.01 -0.34 7.20 -51.93 -0.37 -0.72 16 23 H 0.33 6.38 6.68 -39.29 -0.26 6.12 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.40 6.18 6.62 -40.82 -0.27 5.91 16 LS Contribution 262.90 15.07 3.96 3.96 Total: -1.00 -32.78 262.90 -6.82 -39.60 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.69 Total: 4.90 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.27 Total: -3.88 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.25 Total: -50.83 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.10 Total: -10.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.78 -6.82 -39.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591763771.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.974 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds