Wall clock time and date at job start Sun Mar 29 2020 22:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00045 * 2 1 4 4 C 1.46903 * 111.00058 * 123.95056 * 2 1 3 5 5 C 1.53001 * 109.46590 * 75.45000 * 4 2 1 6 6 C 1.50690 * 115.55459 * 54.67048 * 5 4 2 7 7 O 1.21298 * 120.00602 * 243.49460 * 6 5 4 8 8 N 1.34782 * 120.00024 * 63.49631 * 6 5 4 9 9 C 1.37095 * 119.99887 * 175.35771 * 8 6 5 10 10 H 1.07998 * 120.00657 * 359.97438 * 9 8 6 11 11 C 1.38959 * 119.99790 * 179.97438 * 9 8 6 12 12 N 1.31405 * 119.99880 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99904 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47099 * 90.00057 * 13 11 9 15 15 H 1.48501 * 109.46967 * 209.99395 * 13 11 9 16 16 H 1.48497 * 109.47119 * 329.99763 * 13 11 9 17 17 C 1.53003 * 117.49646 * 200.34305 * 5 4 2 18 18 C 1.53010 * 117.49524 * 268.99592 * 5 4 2 19 19 H 1.09004 * 109.47002 * 296.28214 * 1 2 3 20 20 H 1.09006 * 109.47173 * 56.27728 * 1 2 3 21 21 H 1.09004 * 109.47469 * 176.28319 * 1 2 3 22 22 H 1.09004 * 109.46738 * 183.95246 * 3 2 1 23 23 H 1.08997 * 109.47110 * 303.95149 * 3 2 1 24 24 H 1.09004 * 109.47228 * 63.95547 * 3 2 1 25 25 H 1.08996 * 109.47193 * 315.44764 * 4 2 1 26 26 H 1.08997 * 109.47518 * 195.44443 * 4 2 1 27 27 H 0.97000 * 119.99956 * 355.62472 * 8 6 5 28 28 H 0.97003 * 120.00380 * 180.02562 * 12 11 9 29 29 H 1.09005 * 117.50135 * 215.00014 * 17 5 4 30 30 H 1.09004 * 117.50138 * 0.02562 * 17 5 4 31 31 H 1.08994 * 117.49727 * 359.97438 * 18 5 4 32 32 H 1.09003 * 117.49223 * 144.97337 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8398 -2.2625 0.8604 6 6 2.4488 -2.7517 -0.4282 7 8 1.7403 -3.2172 -1.2957 8 7 3.7810 -2.6721 -0.6168 9 6 4.3461 -3.2030 -1.7474 10 1 3.7240 -3.6855 -2.4867 11 6 5.7195 -3.1204 -1.9422 12 7 6.4765 -2.5329 -1.0429 13 14 6.4896 -3.8445 -3.4823 14 1 6.5267 -2.8124 -4.5494 15 1 7.8725 -4.2936 -3.1800 16 1 5.6822 -5.0029 -3.9418 17 6 1.8710 -3.2104 2.0611 18 6 0.5515 -2.9386 1.3344 19 1 -0.3633 0.4551 0.9215 20 1 -0.3634 0.5706 -0.8548 21 1 -0.3634 -1.0255 -0.0666 22 1 3.0828 1.3432 -0.0708 23 1 1.5898 1.9163 -0.8524 24 1 1.7044 1.8724 0.9233 25 1 1.4420 -0.5039 2.0393 26 1 3.0503 -0.5301 1.2774 27 1 4.3403 -2.2425 0.0491 28 1 7.4351 -2.4749 -1.1790 29 1 2.3322 -4.1878 1.9190 30 1 2.0020 -2.7677 3.0486 31 1 -0.1848 -2.3172 1.8440 32 1 0.1444 -3.7368 0.7137 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602087322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:26 Heat of formation + Delta-G solvation = -31.725945 kcal Electronic energy + Delta-G solvation = -14556.983436 eV Core-core repulsion = 12131.461676 eV Total energy + Delta-G solvation = -2425.521760 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75317 -38.40356 -36.61146 -35.79806 -33.14814 -28.96168 -28.40771 -27.19556 -23.98315 -23.27124 -22.83221 -20.23259 -19.54476 -17.68583 -16.78152 -16.37100 -16.15224 -15.81244 -15.71605 -15.16429 -14.75524 -14.40495 -13.53713 -13.33658 -13.15106 -12.92503 -12.81107 -12.76843 -12.57144 -12.40765 -12.33790 -12.11984 -11.51003 -11.24669 -10.88892 -10.23773 -9.95367 -9.13822 -8.42963 -5.90666 1.38230 1.40623 1.53770 2.09632 2.31335 2.72262 3.19035 3.24507 3.28197 3.84591 3.96504 4.16336 4.31954 4.38112 4.44470 4.58467 4.62728 4.73979 4.79495 4.82344 4.98733 5.02034 5.07448 5.09570 5.27710 5.43466 6.04202 6.17669 6.23797 6.65303 7.17270 7.64532 8.20739 8.74880 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.033725 B = 0.009309 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.057324 B = 3007.110804 C = 3300.285981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.575 5.575 3 C 0.031 3.969 4 C 0.108 3.892 5 C -0.155 4.155 6 C 0.495 3.505 7 O -0.639 6.639 8 N -0.565 5.565 9 C -0.331 4.331 10 H 0.074 0.926 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.991 3.009 14 H -0.272 1.272 15 H -0.268 1.268 16 H -0.274 1.274 17 C -0.145 4.145 18 C -0.139 4.139 19 H 0.045 0.955 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.393 0.607 28 H 0.277 0.723 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 5.760 8.150 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.299 5.299 3 C -0.117 4.117 4 C -0.020 4.020 5 C -0.159 4.159 6 C 0.283 3.717 7 O -0.527 6.527 8 N -0.200 5.200 9 C -0.461 4.461 10 H 0.092 0.908 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.193 1.193 16 H -0.198 1.198 17 C -0.183 4.183 18 C -0.177 4.177 19 H 0.063 0.937 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.227 0.773 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.065 5.259 7.144 11.341 hybrid contribution 0.584 0.165 -0.045 0.609 sum -6.481 5.423 7.099 11.037 Atomic orbital electron populations 1.22368 0.86313 1.02046 1.00884 1.61649 1.09280 1.14667 1.44349 1.22342 1.00223 0.87853 1.01243 1.21502 1.00361 0.88482 0.91703 1.21322 1.04934 0.95597 0.94028 1.19560 0.81904 0.81714 0.88504 1.90440 1.61971 1.53072 1.47220 1.41764 1.06106 1.51692 1.20447 1.19639 0.91579 1.35048 0.99829 0.90821 1.25998 0.95958 0.97509 1.01768 1.69677 1.06413 1.43966 1.36062 0.84966 0.77560 0.78414 0.77605 1.19806 1.19289 1.19843 1.23138 1.00205 0.99166 0.95815 1.22963 0.90583 1.02376 1.01751 0.93657 0.91638 0.92364 0.92575 0.91111 0.93737 0.91012 0.91084 0.77327 0.91405 0.89987 0.84764 0.85574 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.33 127.69 1.19 2.07 16 2 N -0.58 -19.06 4.64 -948.83 -4.40 -23.46 16 3 C 0.03 0.84 9.52 127.69 1.22 2.06 16 4 C 0.11 3.35 4.90 86.30 0.42 3.77 16 5 C -0.15 -5.71 1.80 -52.93 -0.10 -5.80 16 6 C 0.50 25.37 6.73 87.65 0.59 25.96 16 7 O -0.64 -38.20 16.23 -3.08 -0.05 -38.25 16 8 N -0.57 -30.91 5.28 -306.98 -1.62 -32.54 16 9 C -0.33 -19.78 9.68 84.04 0.81 -18.96 16 10 H 0.07 4.70 7.17 -2.91 -0.02 4.68 16 11 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 12 N -0.92 -51.21 13.05 21.67 0.28 -50.93 16 13 Si 0.99 44.50 29.55 68.60 2.03 46.53 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 17 C -0.15 -4.29 9.96 30.62 0.30 -3.99 16 18 C -0.14 -4.27 8.36 30.62 0.26 -4.01 16 19 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 20 H 0.06 1.73 8.12 -2.38 -0.02 1.71 16 21 H 0.06 1.81 6.42 -2.39 -0.02 1.79 16 22 H 0.06 1.65 8.07 -2.39 -0.02 1.63 16 23 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.71 7.92 -2.39 -0.02 1.70 16 26 H 0.07 2.29 7.89 -2.39 -0.02 2.27 16 27 H 0.39 20.71 7.90 -92.71 -0.73 19.98 16 28 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.13 2.92 8.06 -2.39 -0.02 2.90 16 32 H 0.08 2.74 7.96 -2.39 -0.02 2.72 16 Total: -1.00 -70.81 274.33 1.77 -69.03 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.37 Total: 28.77 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.17 Total: 0.84 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -5.74 Total: -106.93 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.05 Total: -38.25 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.81 1.77 -69.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602087322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.305 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds