Wall clock time and date at job start Sun Mar 29 2020 22:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.05713 * 2 1 4 4 C 1.54264 * 110.02901 * 238.58460 * 2 1 3 5 5 C 1.54894 * 104.19523 * 217.10579 * 4 2 1 6 6 C 1.54891 * 102.74723 * 37.93928 * 5 4 2 7 7 H 1.09000 * 110.48003 * 80.87602 * 6 5 4 8 8 O 1.42897 * 110.48477 * 203.37955 * 6 5 4 9 9 C 1.42905 * 114.00263 * 268.54835 * 8 6 5 10 10 C 1.52994 * 109.47379 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47367 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00035 * 179.72339 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 359.72191 * 14 12 11 17 17 H 1.48500 * 109.46986 * 90.00256 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00102 * 16 14 12 20 20 C 1.53869 * 110.03364 * 121.41734 * 2 1 3 21 21 H 1.09000 * 109.47297 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47029 * 299.96229 * 1 2 3 23 23 H 1.08999 * 109.47374 * 59.96336 * 1 2 3 24 24 H 1.08999 * 110.48891 * 98.42895 * 4 2 1 25 25 H 1.09001 * 110.48842 * 335.78149 * 4 2 1 26 26 H 1.09008 * 110.75309 * 279.63044 * 5 4 2 27 27 H 1.08995 * 110.91616 * 156.33451 * 5 4 2 28 28 H 1.08998 * 109.46927 * 59.99870 * 9 8 6 29 29 H 1.09001 * 109.47019 * 300.00142 * 9 8 6 30 30 H 1.08998 * 109.47353 * 59.99940 * 10 9 8 31 31 H 1.09006 * 109.47395 * 300.00196 * 10 9 8 32 32 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 33 33 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 34 34 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 35 35 H 1.09001 * 110.03213 * 359.97438 * 20 2 1 36 36 H 1.08995 * 110.03548 * 238.56955 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0583 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7192 6 6 2.8874 -1.9406 0.7035 7 1 2.2791 -2.8439 0.6572 8 8 4.0362 -2.1544 1.5260 9 6 4.5202 -3.4990 1.5105 10 6 5.7444 -3.6109 2.4212 11 6 6.2629 -5.0503 2.4042 12 6 7.4683 -5.1606 3.3017 13 1 7.8313 -4.2902 3.8279 14 6 8.1110 -6.3718 3.4472 15 7 9.1663 -6.4670 4.2262 16 14 7.4827 -7.8776 2.5376 17 1 8.1452 -7.9671 1.2116 18 1 7.7897 -9.0970 3.3276 19 1 6.0138 -7.7659 2.3505 20 6 2.0571 -0.7535 1.2337 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5133 0.8904 23 1 -0.3634 0.5144 -0.8896 24 1 2.3296 -0.0536 -2.0255 25 1 1.3141 -1.4660 -1.5966 26 1 4.1709 -0.8290 -0.6752 27 1 3.5356 -2.3677 -1.3414 28 1 4.7976 -3.7735 0.4928 29 1 3.7393 -4.1703 1.8678 30 1 5.4665 -3.3365 3.4389 31 1 6.5254 -2.9395 2.0644 32 1 6.5408 -5.3243 1.3864 33 1 5.4821 -5.7220 2.7609 34 1 9.6181 -7.3192 4.3288 35 1 1.2229 -1.1189 1.8326 36 1 2.6867 -0.0954 1.8324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721548604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:36 Heat of formation + Delta-G solvation = -84.361424 kcal Electronic energy + Delta-G solvation = -13926.341211 eV Core-core repulsion = 11602.077349 eV Total energy + Delta-G solvation = -2324.263863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.08301 -36.58663 -33.83758 -31.75141 -30.62841 -28.59633 -26.85000 -24.81470 -22.68882 -20.84370 -20.16187 -19.61431 -17.00665 -16.54219 -15.57119 -15.16690 -14.71000 -14.13756 -13.59416 -13.51340 -13.35854 -12.87663 -12.64852 -12.18914 -11.98996 -11.56536 -11.37285 -11.03419 -10.92369 -10.86553 -10.76653 -10.63966 -10.40318 -9.99611 -9.79947 -9.64127 -9.17594 -9.15094 -8.52711 -6.02811 -4.00880 3.31323 3.38472 3.41979 3.92890 4.46097 4.47748 4.50221 4.70918 5.14684 5.16812 5.30673 5.32540 5.34336 5.43972 5.55211 5.60547 5.68218 5.72730 5.77099 5.82932 5.89290 5.96151 6.09272 6.14256 6.17842 6.27014 6.56105 6.57799 6.90457 7.30259 7.43110 7.60252 7.81430 8.56242 9.02733 9.59202 11.10713 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.070368 B = 0.004767 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.810086 B = 5872.905268 C = 6015.683640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.082 3.918 7 H 0.062 0.938 8 O -0.381 6.381 9 C 0.060 3.940 10 C -0.100 4.100 11 C -0.011 4.011 12 C -0.520 4.520 13 H 0.073 0.927 14 C 0.065 3.935 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.119 4.119 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.677 10.265 -10.342 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.186 4.186 6 C 0.024 3.976 7 H 0.080 0.920 8 O -0.300 6.300 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.049 4.049 12 C -0.557 4.557 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.156 4.156 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.459 10.281 -10.157 21.903 hybrid contribution -0.279 -1.124 -0.597 1.303 sum -16.738 9.157 -10.753 21.900 Atomic orbital electron populations 1.21898 0.95047 1.01774 1.01503 1.21695 0.95517 0.99533 0.94688 0.90863 1.22365 0.97172 0.98958 0.97128 1.23009 0.98398 1.00542 0.96687 1.22916 0.87397 0.97417 0.89869 0.92036 1.87939 1.45079 1.29686 1.67313 1.22804 0.97062 0.82104 0.99592 1.21454 0.94215 0.99792 0.98352 1.19521 0.96771 0.91706 0.96875 1.21121 1.10744 0.96990 1.26891 0.90893 1.25037 0.94633 0.98860 0.95019 1.69917 1.20139 1.25669 1.38543 0.86766 0.79899 0.82581 0.79964 1.20273 1.21339 1.19066 1.22265 0.98944 0.96907 0.97499 0.92615 0.92678 0.92793 0.91596 0.91547 0.90459 0.91585 0.93973 0.93975 0.92004 0.92036 0.97000 0.96556 0.92730 0.91326 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.84 37.16 0.33 -0.79 16 2 C -0.10 -0.88 3.50 -89.51 -0.31 -1.19 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -1.10 6.36 -25.07 -0.16 -1.26 16 5 C -0.15 -1.73 6.62 -24.73 -0.16 -1.89 16 6 C 0.08 1.08 3.32 -25.07 -0.08 1.00 16 7 H 0.06 0.77 7.86 -51.93 -0.41 0.37 16 8 O -0.38 -6.45 10.05 -35.23 -0.35 -6.80 16 9 C 0.06 1.07 5.80 37.15 0.22 1.29 16 10 C -0.10 -2.13 5.52 -26.73 -0.15 -2.28 16 11 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 12 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 13 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 16 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 20 C -0.12 -1.33 6.21 -25.62 -0.16 -1.49 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 26 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.01 0.28 7.58 -51.93 -0.39 -0.11 16 33 H 0.02 0.39 7.19 -51.93 -0.37 0.02 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.07 0.71 7.67 -51.93 -0.40 0.32 16 36 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 LS Contribution 289.61 15.07 4.36 4.36 Total: -1.00 -30.86 289.61 -7.55 -38.41 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -6.63 Total: -5.01 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -1.03 Total: -20.70 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.77 Total: -27.54 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.35 Total: -6.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.86 -7.55 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721548604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.956 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds