Wall clock time and date at job start Sun Mar 29 2020 22:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.05713 * 2 1 4 4 C 1.54264 * 110.02901 * 238.58460 * 2 1 3 5 5 C 1.54894 * 104.19523 * 217.10579 * 4 2 1 6 6 C 1.54891 * 102.74723 * 37.93928 * 5 4 2 7 7 H 1.09000 * 110.48003 * 80.87602 * 6 5 4 8 8 O 1.42897 * 110.48477 * 203.37955 * 6 5 4 9 9 C 1.42905 * 114.00263 * 268.54835 * 8 6 5 10 10 C 1.52994 * 109.47379 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47367 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00035 * 179.72339 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 359.72191 * 14 12 11 17 17 H 1.48500 * 109.46986 * 90.00256 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00102 * 16 14 12 20 20 C 1.53869 * 110.03364 * 121.41734 * 2 1 3 21 21 H 1.09000 * 109.47297 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47029 * 299.96229 * 1 2 3 23 23 H 1.08999 * 109.47374 * 59.96336 * 1 2 3 24 24 H 1.08999 * 110.48891 * 98.42895 * 4 2 1 25 25 H 1.09001 * 110.48842 * 335.78149 * 4 2 1 26 26 H 1.09008 * 110.75309 * 279.63044 * 5 4 2 27 27 H 1.08995 * 110.91616 * 156.33451 * 5 4 2 28 28 H 1.08998 * 109.46927 * 59.99870 * 9 8 6 29 29 H 1.09001 * 109.47019 * 300.00142 * 9 8 6 30 30 H 1.08998 * 109.47353 * 59.99940 * 10 9 8 31 31 H 1.09006 * 109.47395 * 300.00196 * 10 9 8 32 32 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 33 33 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 34 34 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 35 35 H 1.09001 * 110.03213 * 359.97438 * 20 2 1 36 36 H 1.08995 * 110.03548 * 238.56955 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0583 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7192 6 6 2.8874 -1.9406 0.7035 7 1 2.2791 -2.8439 0.6572 8 8 4.0362 -2.1544 1.5260 9 6 4.5202 -3.4990 1.5105 10 6 5.7444 -3.6109 2.4212 11 6 6.2629 -5.0503 2.4042 12 6 7.4683 -5.1606 3.3017 13 1 7.8313 -4.2902 3.8279 14 6 8.1110 -6.3718 3.4472 15 7 9.1663 -6.4670 4.2262 16 14 7.4827 -7.8776 2.5376 17 1 8.1452 -7.9671 1.2116 18 1 7.7897 -9.0970 3.3276 19 1 6.0138 -7.7659 2.3505 20 6 2.0571 -0.7535 1.2337 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5133 0.8904 23 1 -0.3634 0.5144 -0.8896 24 1 2.3296 -0.0536 -2.0255 25 1 1.3141 -1.4660 -1.5966 26 1 4.1709 -0.8290 -0.6752 27 1 3.5356 -2.3677 -1.3414 28 1 4.7976 -3.7735 0.4928 29 1 3.7393 -4.1703 1.8678 30 1 5.4665 -3.3365 3.4389 31 1 6.5254 -2.9395 2.0644 32 1 6.5408 -5.3243 1.3864 33 1 5.4821 -5.7220 2.7609 34 1 9.6181 -7.3192 4.3288 35 1 1.2229 -1.1189 1.8326 36 1 2.6867 -0.0954 1.8324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721548604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:36 Heat of formation + Delta-G solvation = -102.424944 kcal Electronic energy + Delta-G solvation = -13927.124504 eV Core-core repulsion = 11602.077349 eV Total energy + Delta-G solvation = -2325.047156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.08720 -37.74013 -35.74953 -33.73406 -31.50308 -29.72498 -28.49205 -25.60075 -24.50372 -22.08794 -21.59991 -20.50010 -18.99232 -17.88993 -16.78527 -16.35368 -16.27436 -15.56385 -14.85922 -14.75411 -14.55450 -14.22468 -14.03560 -13.60200 -13.10252 -12.90694 -12.72857 -12.45389 -12.20378 -11.86825 -11.82776 -11.64566 -11.61088 -11.53138 -11.49883 -11.31486 -11.27258 -10.77792 -10.36805 -8.30466 -6.35983 1.36412 1.38943 1.51073 2.36273 2.74301 3.04387 3.64169 3.67949 3.94001 4.14266 4.20142 4.31842 4.41243 4.52168 4.55085 4.57675 4.68506 4.70708 4.81474 4.85242 4.94078 4.98003 5.04266 5.07076 5.14317 5.24634 5.33321 5.35622 5.44938 5.53521 5.55633 5.62760 6.25701 6.40949 6.72141 7.28492 8.86678 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.070368 B = 0.004767 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.810086 B = 5872.905268 C = 6015.683640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.149 4.149 6 C 0.071 3.929 7 H 0.071 0.929 8 O -0.402 6.402 9 C 0.072 3.928 10 C -0.096 4.096 11 C -0.007 4.007 12 C -0.539 4.539 13 H 0.028 0.972 14 C 0.002 3.998 15 N -0.953 5.953 16 Si 0.957 3.043 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.243 1.243 20 C -0.119 4.119 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.025 0.975 33 H 0.026 0.974 34 H 0.267 0.733 35 H 0.076 0.924 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.028 9.576 -12.368 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.150 4.150 5 C -0.187 4.187 6 C 0.013 3.987 7 H 0.089 0.911 8 O -0.322 6.322 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.044 4.044 12 C -0.577 4.577 13 H 0.046 0.954 14 C -0.195 4.195 15 N -0.593 5.593 16 Si 0.779 3.221 17 H -0.189 1.189 18 H -0.208 1.208 19 H -0.166 1.166 20 C -0.156 4.156 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.827 9.619 -12.189 24.404 hybrid contribution 0.503 -0.802 0.105 0.952 sum -18.325 8.817 -12.085 23.655 Atomic orbital electron populations 1.21875 0.93632 1.02150 1.02277 1.21691 0.96648 0.99268 0.93548 0.90653 1.22362 0.96149 0.99159 0.97310 1.23001 0.99116 1.00702 0.95908 1.23244 0.86502 0.98593 0.90330 0.91055 1.87901 1.46745 1.29037 1.68551 1.22537 0.95714 0.83046 0.99166 1.21279 0.95728 0.97605 0.98731 1.19437 0.94915 0.93906 0.96162 1.21474 1.12737 0.95859 1.27582 0.95402 1.26103 0.94652 1.02811 0.95937 1.70080 1.21837 1.26959 1.40429 0.85567 0.80500 0.77387 0.78650 1.18897 1.20815 1.16642 1.22302 0.98667 0.96199 0.98451 0.92426 0.92392 0.91605 0.90415 0.90375 0.91813 0.91254 0.92710 0.92650 0.93266 0.93326 0.95716 0.95557 0.92374 0.90553 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.84 71.98 0.64 -1.16 16 2 C -0.09 -1.50 3.50 -10.07 -0.04 -1.54 16 3 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 4 C -0.11 -1.78 6.36 31.67 0.20 -1.58 16 5 C -0.15 -3.21 6.62 31.89 0.21 -3.00 16 6 C 0.07 1.75 3.32 31.67 0.11 1.85 16 7 H 0.07 1.62 7.86 -2.39 -0.02 1.60 16 8 O -0.40 -13.27 10.05 -148.98 -1.50 -14.77 16 9 C 0.07 2.42 5.80 71.98 0.42 2.83 16 10 C -0.10 -4.05 5.52 30.59 0.17 -3.88 16 11 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 12 C -0.54 -32.26 9.66 25.60 0.25 -32.02 16 13 H 0.03 1.85 7.99 -2.92 -0.02 1.82 16 14 C 0.00 0.09 5.47 84.66 0.46 0.55 16 15 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 16 Si 0.96 44.46 27.47 68.60 1.88 46.34 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 20 C -0.12 -2.50 6.21 31.32 0.19 -2.30 16 21 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 22 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.08 7.85 -2.39 -0.02 1.06 16 26 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.02 1.12 7.58 -2.39 -0.02 1.11 16 33 H 0.03 1.21 7.19 -2.39 -0.02 1.19 16 34 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.08 1.46 7.67 -2.39 -0.02 1.44 16 36 H 0.06 1.48 8.07 -2.39 -0.02 1.46 16 Total: -1.00 -67.18 289.61 4.36 -62.82 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.95 Total: 6.80 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 2.73 Total: -40.44 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.30 Total: -60.75 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.50 Total: -14.77 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -67.18 4.36 -62.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721548604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.608 kcal (2) G-P(sol) polarization free energy of solvation -67.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds