Wall clock time and date at job start Sun Mar 29 2020 22:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.05425 * 2 1 4 4 C 1.53869 * 110.03216 * 238.57485 * 2 1 3 5 5 C 1.54266 * 106.60031 * 240.71686 * 4 2 1 6 6 C 1.54894 * 104.31305 * 336.32486 * 5 4 2 7 7 H 1.08993 * 110.76071 * 279.69749 * 6 5 4 8 8 O 1.42899 * 110.75348 * 156.31802 * 6 5 4 9 9 C 1.42900 * 113.99526 * 91.46273 * 8 6 5 10 10 C 1.53005 * 109.47183 * 179.97438 * 9 8 6 11 11 C 1.52991 * 109.47243 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47436 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99478 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00419 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99896 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00031 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47067 * 59.99831 * 16 14 12 18 18 H 1.48496 * 109.46972 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47097 * 299.99804 * 16 14 12 20 20 C 1.54266 * 110.02878 * 121.41108 * 2 1 3 21 21 H 1.09004 * 109.47199 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47406 * 299.96839 * 1 2 3 23 23 H 1.09006 * 109.46643 * 59.97229 * 1 2 3 24 24 H 1.09001 * 110.02983 * 121.43438 * 4 2 1 25 25 H 1.08996 * 110.07773 * 0.02582 * 4 2 1 26 26 H 1.09002 * 110.48629 * 95.07240 * 5 4 2 27 27 H 1.08998 * 110.48744 * 217.58143 * 5 4 2 28 28 H 1.09005 * 109.47262 * 299.99422 * 9 8 6 29 29 H 1.08993 * 109.47631 * 59.99382 * 9 8 6 30 30 H 1.08997 * 109.46847 * 299.99706 * 10 9 8 31 31 H 1.08996 * 109.46770 * 59.99249 * 10 9 8 32 32 H 1.08997 * 109.47313 * 299.99854 * 11 10 9 33 33 H 1.09005 * 109.47499 * 59.99916 * 11 10 9 34 34 H 0.97003 * 119.99747 * 179.97438 * 15 14 12 35 35 H 1.09005 * 110.48526 * 261.57665 * 20 2 1 36 36 H 1.09006 * 110.48581 * 24.21857 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7537 -1.2336 5 6 2.8875 -1.9408 -0.7032 6 6 3.3167 -1.5027 0.7191 7 1 4.1739 -0.8311 0.6743 8 8 3.6050 -2.6407 1.5340 9 6 4.9752 -3.0452 1.5033 10 6 5.1672 -4.2648 2.4071 11 6 6.6341 -4.6984 2.3737 12 6 6.8234 -5.8992 3.2643 13 1 5.9816 -6.3116 3.8008 14 6 8.0713 -6.4707 3.3951 15 7 9.0965 -5.9676 2.7429 16 14 8.3057 -7.9597 4.4985 17 1 7.4499 -9.0732 4.0158 18 1 9.7297 -8.3797 4.4672 19 1 7.9239 -7.6094 5.8903 20 6 2.0584 -0.7554 1.2370 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5133 0.8902 23 1 -0.3633 0.5143 -0.8898 24 1 2.6868 -0.0956 -1.8323 25 1 1.2235 -1.1194 -1.8330 26 1 2.2772 -2.8427 -0.6568 27 1 3.7625 -2.1054 -1.3320 28 1 5.2555 -3.3020 0.4817 29 1 5.6034 -2.2282 1.8579 30 1 4.8871 -4.0077 3.4286 31 1 4.5390 -5.0820 2.0528 32 1 6.9138 -4.9556 1.3521 33 1 7.2627 -3.8812 2.7278 34 1 9.9745 -6.3695 2.8352 35 1 2.3296 -0.0534 2.0256 36 1 1.3142 -1.4659 1.5967 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721548605.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:40 Heat of formation + Delta-G solvation = -88.031169 kcal Electronic energy + Delta-G solvation = -13871.386067 eV Core-core repulsion = 11546.963072 eV Total energy + Delta-G solvation = -2324.422995 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.98175 -36.51279 -33.76796 -31.59791 -30.49709 -28.47550 -26.46376 -24.75533 -22.89465 -20.79736 -20.05173 -19.65158 -16.74814 -16.10597 -15.87214 -15.04691 -14.45051 -14.42782 -13.83476 -13.21702 -13.00320 -12.65998 -12.47038 -12.14438 -11.95052 -11.41802 -11.19718 -11.02469 -10.81996 -10.79913 -10.64242 -10.55680 -10.45063 -10.24918 -9.77419 -9.40293 -9.08856 -9.05785 -8.33241 -5.98707 -4.00914 3.35649 3.39319 3.42414 3.98127 4.48142 4.52180 4.56901 4.81892 5.18921 5.22573 5.28954 5.37136 5.40702 5.49923 5.61219 5.69333 5.75515 5.84115 5.87320 5.88773 5.96845 6.00070 6.19622 6.23230 6.26283 6.31349 6.73012 6.79034 7.12993 7.65770 7.72136 7.81525 8.01007 8.44239 9.05569 9.62957 11.12861 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.086076 B = 0.004392 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.217386 B = 6374.252380 C = 6508.942782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.118 4.118 5 C -0.148 4.148 6 C 0.081 3.919 7 H 0.064 0.936 8 O -0.382 6.382 9 C 0.063 3.937 10 C -0.108 4.108 11 C 0.023 3.977 12 C -0.520 4.520 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.116 4.116 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.661 11.622 -6.570 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.156 4.156 5 C -0.186 4.186 6 C 0.022 3.978 7 H 0.082 0.918 8 O -0.301 6.301 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.014 4.014 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.153 4.153 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.606 11.500 -6.493 18.962 hybrid contribution 0.515 -0.679 0.362 0.926 sum -13.092 10.821 -6.131 18.057 Atomic orbital electron populations 1.21879 0.94883 1.01922 1.01390 1.21680 0.95829 0.99205 0.94795 0.91058 1.22143 0.99431 0.96912 0.97127 1.22857 1.00058 0.98760 0.96951 1.23095 0.96841 0.87887 0.89928 0.91788 1.87912 1.28189 1.46586 1.67396 1.22800 0.80953 0.97872 0.99718 1.21648 1.00825 0.94236 0.97835 1.19044 0.88731 0.96269 0.97328 1.21196 0.94331 1.13130 1.27155 0.92578 1.25027 0.96065 0.97417 0.95986 1.69958 1.00120 1.41143 1.42414 0.86622 0.76963 0.83068 0.81146 1.20195 1.21294 1.20201 1.22529 0.97092 0.98631 0.97089 0.92450 0.92736 0.92833 0.91939 0.91583 0.90697 0.91682 0.93938 0.93934 0.92639 0.92646 0.96503 0.96508 0.92942 0.91401 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.84 37.16 0.33 -0.86 16 2 C -0.10 -0.92 3.50 -89.50 -0.31 -1.23 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -1.16 6.46 -25.62 -0.17 -1.33 16 5 C -0.15 -1.82 6.54 -25.07 -0.16 -1.99 16 6 C 0.08 1.12 3.36 -24.55 -0.08 1.04 16 7 H 0.06 0.85 7.89 -51.93 -0.41 0.44 16 8 O -0.38 -6.75 10.14 -35.23 -0.36 -7.11 16 9 C 0.06 1.18 5.81 37.16 0.22 1.40 16 10 C -0.11 -2.39 5.52 -26.73 -0.15 -2.54 16 11 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.12 -1.35 6.10 -24.88 -0.15 -1.50 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.59 7.67 -51.93 -0.40 0.20 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.78 8.11 -51.93 -0.42 0.35 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -30.36 293.38 -7.92 -38.28 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -6.67 Total: -5.56 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -1.03 Total: -20.41 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.74 Total: -26.58 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.36 Total: -7.11 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.36 -7.92 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721548605.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.751 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds