Wall clock time and date at job start Sun Mar 29 2020 22:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47362 * 2 1 4 4 C 1.50699 * 109.47073 * 239.99560 * 2 1 3 5 5 H 1.07999 * 120.00188 * 239.99601 * 4 2 1 6 6 C 1.37879 * 119.99716 * 60.00386 * 4 2 1 7 7 N 1.31507 * 120.00319 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99710 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46945 * 119.99954 * 8 6 4 11 11 H 1.48502 * 109.46676 * 239.99812 * 8 6 4 12 12 N 1.46907 * 109.47012 * 119.99868 * 2 1 3 13 13 C 1.46898 * 111.00019 * 287.53450 * 12 2 1 14 14 C 1.46898 * 111.00065 * 51.49250 * 12 2 1 15 15 N 1.46494 * 109.47136 * 154.84177 * 14 12 2 16 16 C 1.47389 * 132.38252 * 89.99679 * 15 14 12 17 17 C 1.53734 * 86.50392 * 180.02562 * 16 15 14 18 18 C 1.36121 * 132.37741 * 269.92741 * 15 14 12 19 19 O 1.21286 * 134.28309 * 359.97438 * 18 15 14 20 20 H 1.09002 * 109.46981 * 173.71116 * 1 2 3 21 21 H 1.08994 * 109.46887 * 293.71026 * 1 2 3 22 22 H 1.09000 * 109.47034 * 53.71002 * 1 2 3 23 23 H 0.97001 * 120.00549 * 180.02562 * 7 6 4 24 24 H 1.08991 * 109.47364 * 183.95108 * 13 12 2 25 25 H 1.08996 * 109.47493 * 303.95871 * 13 12 2 26 26 H 1.09005 * 109.46761 * 63.95123 * 13 12 2 27 27 H 1.09001 * 109.47458 * 34.83711 * 14 12 2 28 28 H 1.09007 * 109.46985 * 274.83975 * 14 12 2 29 29 H 1.09004 * 113.70533 * 65.60190 * 16 15 14 30 30 H 1.09002 * 113.79935 * 294.41711 * 16 15 14 31 31 H 1.09003 * 113.68462 * 114.42527 * 17 16 15 32 32 H 1.08997 * 113.69017 * 245.47541 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1484 -2.2859 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 1.8056 0.1230 2.4024 14 6 1.3901 -2.0124 1.3393 15 7 2.2660 -2.8912 2.1181 16 6 2.3745 -3.1584 3.5635 17 6 3.5071 -4.1332 3.2027 18 6 3.2623 -3.7462 1.7585 19 8 3.7589 -4.0709 0.7006 20 1 -0.3633 -1.0215 -0.1126 21 1 -0.3633 0.4132 0.9409 22 1 -0.3633 0.6083 -0.8283 23 1 0.7082 1.1608 -3.4844 24 1 2.2396 -0.3816 3.2655 25 1 2.2818 1.0947 2.2722 26 1 0.7362 0.2611 2.5621 27 1 1.2276 -2.4439 0.3516 28 1 0.4337 -1.9063 1.8513 29 1 1.4953 -3.6446 3.9864 30 1 2.7056 -2.2987 4.1461 31 1 4.4837 -3.8282 3.5787 32 1 3.2745 -5.1753 3.4220 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857231895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:54 Heat of formation + Delta-G solvation = 7.994678 kcal Electronic energy + Delta-G solvation = -14635.083738 eV Core-core repulsion = 12211.284393 eV Total energy + Delta-G solvation = -2423.799345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.98219 -37.09409 -35.89624 -32.71481 -29.90695 -28.66681 -25.54843 -25.00757 -24.40018 -23.02099 -19.58671 -18.09271 -16.53182 -16.35508 -16.18461 -15.74113 -14.79570 -13.84776 -13.68015 -13.48375 -12.89115 -12.73699 -12.13612 -11.96916 -11.66138 -11.61218 -11.38258 -10.97995 -10.81474 -10.71108 -10.44531 -10.14221 -9.91405 -9.46092 -8.97593 -8.47720 -8.28823 -7.27018 -5.99729 -4.02537 2.92437 3.35087 3.40395 3.42874 3.54025 4.28175 4.47757 4.74944 5.03627 5.14927 5.32977 5.42290 5.56015 5.68559 5.86107 5.98003 6.07959 6.30530 6.37487 6.66198 6.75665 6.93179 7.04670 7.14075 7.39924 7.62233 7.89250 8.07956 8.30327 8.54986 8.70365 9.07141 9.63768 11.07699 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.031994 B = 0.010533 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.966382 B = 2657.609392 C = 3346.236605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.215 3.785 3 H 0.042 0.958 4 C -0.502 4.502 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.550 5.550 13 C 0.029 3.971 14 C 0.295 3.705 15 N -0.625 5.625 16 C 0.103 3.897 17 C -0.180 4.180 18 C 0.529 3.471 19 O -0.503 6.503 20 H 0.030 0.970 21 H 0.008 0.992 22 H 0.087 0.913 23 H 0.259 0.741 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.017 0.983 27 H 0.103 0.897 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -5.713 12.922 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.109 3.891 3 H 0.060 0.940 4 C -0.540 4.540 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.276 5.276 13 C -0.120 4.120 14 C 0.085 3.915 15 N -0.364 5.364 16 C -0.020 4.020 17 C -0.220 4.220 18 C 0.314 3.686 19 O -0.375 6.375 20 H 0.049 0.951 21 H 0.027 0.973 22 H 0.106 0.894 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.121 0.879 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.529 -5.716 12.007 13.309 hybrid contribution -0.691 -0.008 -0.687 0.974 sum -0.162 -5.724 11.320 12.686 Atomic orbital electron populations 1.22436 1.00507 1.00355 0.99575 1.19322 0.89787 0.94478 0.85537 0.94011 1.21214 1.30595 1.12672 0.89527 0.91603 1.24909 0.95098 0.95065 0.99057 1.69901 1.37197 1.23128 1.23357 0.86478 0.78664 0.79970 0.82695 1.19372 1.21155 1.21049 1.62032 1.59299 1.02708 1.03567 1.22314 0.98190 0.98085 0.93383 1.21825 0.87440 0.86364 0.95886 1.51359 1.36818 1.41760 1.06465 1.22854 0.97615 0.97566 0.83978 1.23889 1.00973 1.01679 0.95480 1.22120 0.78393 0.78444 0.89610 1.90741 1.55293 1.60431 1.31010 0.95084 0.97283 0.89422 0.93084 0.93397 0.92178 0.96477 0.87889 0.93894 0.90009 0.90008 0.87383 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.15 37.16 0.30 -3.71 16 2 C 0.21 5.44 2.28 -68.86 -0.16 5.28 16 3 H 0.04 1.16 7.97 -51.93 -0.41 0.74 16 4 C -0.50 -14.25 7.67 -34.44 -0.26 -14.52 16 5 H 0.07 1.99 7.56 -52.49 -0.40 1.59 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -25.83 11.39 55.43 0.63 -25.20 16 8 Si 0.89 22.45 29.54 -169.99 -5.02 17.42 16 9 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 N -0.55 -12.00 4.78 -240.20 -1.15 -13.15 16 13 C 0.03 0.52 9.22 60.06 0.55 1.07 16 14 C 0.29 5.84 5.03 -63.32 -0.32 5.52 16 15 N -0.62 -10.59 3.55 -181.92 -0.65 -11.23 16 16 C 0.10 1.13 8.96 -3.29 -0.03 1.10 16 17 C -0.18 -1.98 8.28 -27.14 -0.22 -2.20 16 18 C 0.53 9.56 9.67 -10.10 -0.10 9.46 16 19 O -0.50 -11.64 18.03 5.55 0.10 -11.54 16 20 H 0.03 0.71 7.00 -51.93 -0.36 0.35 16 21 H 0.01 0.18 6.65 -51.93 -0.35 -0.17 16 22 H 0.09 2.30 6.26 -51.93 -0.33 1.97 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.05 0.73 7.05 -51.93 -0.37 0.36 16 25 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 26 H 0.02 0.29 6.68 -51.93 -0.35 -0.06 16 27 H 0.10 2.37 6.45 -51.93 -0.33 2.04 16 28 H 0.04 0.77 7.62 -51.93 -0.40 0.37 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.81 7.32 -51.93 -0.38 0.43 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 264.49 15.07 3.99 3.99 Total: -1.00 -32.55 264.49 -6.92 -39.47 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.49 Total: -3.37 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.33 Total: 3.61 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -1.16 Total: -49.58 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.10 Total: -11.54 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.55 -6.92 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857231895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.460 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds