Wall clock time and date at job start Sun Mar 29 2020 22:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47362 * 2 1 4 4 C 1.50699 * 109.47073 * 239.99560 * 2 1 3 5 5 H 1.07999 * 120.00188 * 239.99601 * 4 2 1 6 6 C 1.37879 * 119.99716 * 60.00386 * 4 2 1 7 7 N 1.31507 * 120.00319 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99710 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46945 * 119.99954 * 8 6 4 11 11 H 1.48502 * 109.46676 * 239.99812 * 8 6 4 12 12 N 1.46907 * 109.47012 * 119.99868 * 2 1 3 13 13 C 1.46898 * 111.00019 * 287.53450 * 12 2 1 14 14 C 1.46898 * 111.00065 * 51.49250 * 12 2 1 15 15 N 1.46494 * 109.47136 * 154.84177 * 14 12 2 16 16 C 1.47389 * 132.38252 * 89.99679 * 15 14 12 17 17 C 1.53734 * 86.50392 * 180.02562 * 16 15 14 18 18 C 1.36121 * 132.37741 * 269.92741 * 15 14 12 19 19 O 1.21286 * 134.28309 * 359.97438 * 18 15 14 20 20 H 1.09002 * 109.46981 * 173.71116 * 1 2 3 21 21 H 1.08994 * 109.46887 * 293.71026 * 1 2 3 22 22 H 1.09000 * 109.47034 * 53.71002 * 1 2 3 23 23 H 0.97001 * 120.00549 * 180.02562 * 7 6 4 24 24 H 1.08991 * 109.47364 * 183.95108 * 13 12 2 25 25 H 1.08996 * 109.47493 * 303.95871 * 13 12 2 26 26 H 1.09005 * 109.46761 * 63.95123 * 13 12 2 27 27 H 1.09001 * 109.47458 * 34.83711 * 14 12 2 28 28 H 1.09007 * 109.46985 * 274.83975 * 14 12 2 29 29 H 1.09004 * 113.70533 * 65.60190 * 16 15 14 30 30 H 1.09002 * 113.79935 * 294.41711 * 16 15 14 31 31 H 1.09003 * 113.68462 * 114.42527 * 17 16 15 32 32 H 1.08997 * 113.69017 * 245.47541 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1484 -2.2859 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 1.8056 0.1230 2.4024 14 6 1.3901 -2.0124 1.3393 15 7 2.2660 -2.8912 2.1181 16 6 2.3745 -3.1584 3.5635 17 6 3.5071 -4.1332 3.2027 18 6 3.2623 -3.7462 1.7585 19 8 3.7589 -4.0709 0.7006 20 1 -0.3633 -1.0215 -0.1126 21 1 -0.3633 0.4132 0.9409 22 1 -0.3633 0.6083 -0.8283 23 1 0.7082 1.1608 -3.4844 24 1 2.2396 -0.3816 3.2655 25 1 2.2818 1.0947 2.2722 26 1 0.7362 0.2611 2.5621 27 1 1.2276 -2.4439 0.3516 28 1 0.4337 -1.9063 1.8513 29 1 1.4953 -3.6446 3.9864 30 1 2.7056 -2.2987 4.1461 31 1 4.4837 -3.8282 3.5787 32 1 3.2745 -5.1753 3.4220 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857231895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:54 Heat of formation + Delta-G solvation = -16.577224 kcal Electronic energy + Delta-G solvation = -14636.149255 eV Core-core repulsion = 12211.284393 eV Total energy + Delta-G solvation = -2424.864863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24400 -38.81718 -37.35672 -34.78856 -31.45244 -30.34153 -27.43020 -26.60347 -25.57650 -24.58333 -21.39128 -19.45285 -18.42134 -17.74018 -17.49622 -17.17917 -16.75996 -15.55645 -15.41650 -15.06111 -14.42337 -14.15450 -13.81398 -13.62068 -13.24298 -12.86247 -12.73670 -12.62608 -12.58729 -12.39287 -12.34510 -12.18481 -11.83158 -11.03954 -10.87001 -10.57358 -9.75966 -8.93359 -8.18590 -6.27594 1.32191 1.34666 1.49380 1.56999 2.17742 2.37979 3.09836 3.18379 3.49183 3.81123 4.14783 4.30214 4.42798 4.59857 4.61352 4.67987 4.78610 4.85797 4.88477 5.01273 5.05897 5.20904 5.40533 5.62561 5.64628 5.81636 5.86775 6.16016 6.40642 6.68421 6.84990 7.34210 7.42367 8.87368 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.031994 B = 0.010533 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.966382 B = 2657.609392 C = 3346.236605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.221 3.779 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.036 0.964 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.948 3.052 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.274 1.274 12 N -0.571 5.571 13 C 0.032 3.968 14 C 0.300 3.700 15 N -0.635 5.635 16 C 0.110 3.890 17 C -0.146 4.146 18 C 0.497 3.503 19 O -0.574 6.574 20 H 0.029 0.971 21 H 0.037 0.963 22 H 0.060 0.940 23 H 0.264 0.736 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -6.292 15.458 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.114 3.886 3 H 0.030 0.970 4 C -0.555 4.555 5 H 0.054 0.946 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.775 3.225 9 H -0.211 1.211 10 H -0.198 1.198 11 H -0.200 1.200 12 N -0.297 5.297 13 C -0.116 4.116 14 C 0.089 3.911 15 N -0.373 5.373 16 C -0.010 4.010 17 C -0.186 4.186 18 C 0.285 3.715 19 O -0.452 6.452 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.149 0.851 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.199 -6.287 14.610 15.907 hybrid contribution -0.589 0.163 -1.396 1.524 sum -0.390 -6.124 13.214 14.570 Atomic orbital electron populations 1.22184 0.99214 0.99838 0.99925 1.19018 0.90605 0.92693 0.86319 0.96988 1.21310 1.30543 1.12029 0.91574 0.94611 1.25528 0.95370 0.95771 1.01316 1.69979 1.37563 1.23696 1.24076 0.85653 0.78366 0.78510 0.79995 1.21086 1.19777 1.19954 1.61894 1.60089 1.03796 1.03894 1.22366 0.99179 0.97589 0.92457 1.21520 0.89180 0.85553 0.94819 1.51699 1.35863 1.40486 1.09292 1.23285 0.98977 0.98401 0.80374 1.23863 1.02331 1.03726 0.88650 1.23631 0.77966 0.78294 0.91573 1.90681 1.57487 1.62670 1.34379 0.95198 0.94379 0.92115 0.92715 0.90185 0.92768 0.95313 0.92589 0.91470 0.86552 0.87905 0.85065 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.23 8.15 71.98 0.59 -6.64 16 2 C 0.22 11.45 2.28 44.17 0.10 11.55 16 3 H 0.01 0.69 7.97 -2.39 -0.02 0.68 16 4 C -0.52 -30.52 7.67 25.60 0.20 -30.33 16 5 H 0.04 2.29 7.56 -2.91 -0.02 2.27 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -53.51 11.39 21.45 0.24 -53.26 16 8 Si 0.95 47.31 29.54 68.60 2.03 49.33 16 9 H -0.29 -14.88 7.11 99.48 0.71 -14.18 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 12 N -0.57 -24.78 4.78 -913.85 -4.37 -29.15 16 13 C 0.03 1.06 9.22 127.69 1.18 2.24 16 14 C 0.30 11.79 5.03 170.81 0.86 12.65 16 15 N -0.64 -20.46 3.55 -847.08 -3.01 -23.47 16 16 C 0.11 1.87 8.96 86.38 0.77 2.65 16 17 C -0.15 -2.61 8.28 30.37 0.25 -2.36 16 18 C 0.50 17.70 9.67 87.62 0.85 18.55 16 19 O -0.57 -27.81 18.03 -3.05 -0.05 -27.87 16 20 H 0.03 1.38 7.00 -2.39 -0.02 1.36 16 21 H 0.04 1.54 6.65 -2.39 -0.02 1.52 16 22 H 0.06 3.21 6.26 -2.39 -0.01 3.20 16 23 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 24 H 0.08 2.11 7.05 -2.39 -0.02 2.10 16 25 H 0.05 1.84 8.03 -2.39 -0.02 1.82 16 26 H 0.03 0.88 6.68 -2.38 -0.02 0.87 16 27 H 0.06 2.70 6.45 -2.39 -0.02 2.69 16 28 H 0.07 2.27 7.62 -2.38 -0.02 2.25 16 29 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.10 1.41 7.32 -2.39 -0.02 1.39 16 31 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -75.87 264.49 1.18 -74.69 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: 1.10 Total: -0.16 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 5.24 Total: 9.88 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -7.13 Total: -105.87 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.05 Total: -27.87 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -75.87 1.18 -74.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857231895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.112 kcal (2) G-P(sol) polarization free energy of solvation -75.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds