Wall clock time and date at job start Sun Mar 29 2020 21:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48502 * 109.47033 * 269.99828 * 3 2 1 5 5 H 1.48506 * 109.47354 * 29.99969 * 3 2 1 6 6 H 1.48507 * 109.47273 * 149.99849 * 3 2 1 7 7 C 1.37876 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00150 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.22164 * 35.60847 * 11 10 9 13 13 C 1.51801 * 109.21812 * 155.00142 * 11 10 9 14 14 C 1.51782 * 113.80719 * 187.13057 * 13 11 10 15 15 C 1.52983 * 110.88264 * 292.99375 * 14 13 11 16 16 N 1.47204 * 108.66257 * 86.47039 * 15 14 13 17 17 C 1.33366 * 120.42573 * 288.04044 * 16 15 14 18 18 O 1.21286 * 119.89094 * 180.28651 * 17 16 15 19 19 C 1.51425 * 120.22028 * 0.28547 * 17 16 15 20 20 H 0.96998 * 119.99627 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 22 22 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 23 23 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 24 24 H 1.09001 * 108.61260 * 308.24389 * 13 11 10 25 25 H 1.08991 * 108.61513 * 66.01452 * 13 11 10 26 26 H 1.09003 * 109.19409 * 53.35980 * 14 13 11 27 27 H 1.09000 * 109.19241 * 172.63366 * 14 13 11 28 28 H 1.09003 * 109.60709 * 206.21986 * 15 14 13 29 29 H 1.08997 * 109.60609 * 326.55065 * 15 14 13 30 30 H 0.96994 * 119.78224 * 108.06161 * 16 15 14 31 31 H 1.09005 * 109.63434 * 311.53242 * 19 17 16 32 32 H 1.08995 * 109.63731 * 190.93383 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0022 12 1 5.8502 -1.7916 0.6020 13 6 5.9340 -3.9305 0.6078 14 6 7.4351 -4.0110 0.8180 15 6 8.1730 -4.0320 -0.5219 16 7 8.3972 -2.6440 -0.9579 17 6 7.3792 -1.8996 -1.3917 18 8 7.5759 -0.7588 -1.7536 19 6 5.9788 -2.4739 -1.4340 20 1 -0.4849 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.6259 -3.0953 -0.7806 24 1 5.4402 -4.0634 1.5704 25 1 5.6308 -4.7443 -0.0508 26 1 7.7631 -3.1460 1.3945 27 1 7.6711 -4.9199 1.3715 28 1 9.1315 -4.5375 -0.4037 29 1 7.5710 -4.5580 -1.2628 30 1 9.2911 -2.2686 -0.9298 31 1 5.9982 -3.4515 -1.9157 32 1 5.3240 -1.8020 -1.9888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877482558.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:59 Heat of formation + Delta-G solvation = -45.577925 kcal Electronic energy + Delta-G solvation = -14397.865119 eV Core-core repulsion = 11971.742692 eV Total energy + Delta-G solvation = -2426.122427 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15692 -37.07141 -35.51146 -32.93741 -31.83210 -30.11200 -27.08489 -26.12650 -23.10582 -21.08656 -20.48840 -19.74948 -17.29908 -16.81105 -16.68138 -15.30486 -14.64957 -14.19571 -14.02831 -13.72592 -13.61635 -13.36537 -12.75838 -12.56457 -12.22132 -11.76236 -11.48720 -11.22207 -10.88018 -10.72933 -10.58440 -10.20901 -9.80015 -9.73732 -9.28053 -9.15476 -8.58760 -7.57442 -6.05154 -4.03476 2.74743 3.29261 3.33444 3.40256 3.45824 4.44688 4.47265 4.67982 4.77511 4.91022 5.11930 5.25480 5.27850 5.29172 5.45367 5.61242 5.77900 5.85804 5.97709 6.07927 6.35165 6.41708 6.77763 6.81320 7.02505 7.23960 7.59641 7.84087 8.25931 8.31072 8.62896 9.01861 9.57076 11.07863 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.041983 B = 0.008157 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.784245 B = 3431.998629 C = 3875.103437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.670 5.670 11 C 0.094 3.906 12 H 0.072 0.928 13 C -0.112 4.112 14 C -0.140 4.140 15 C 0.108 3.892 16 N -0.728 5.728 17 C 0.521 3.479 18 O -0.553 6.553 19 C -0.171 4.171 20 H 0.264 0.736 21 H 0.026 0.974 22 H -0.016 1.016 23 H 0.338 0.662 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.396 0.604 31 H 0.088 0.912 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.720 -9.739 -0.466 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.098 0.902 9 C 0.034 3.966 10 N -0.299 5.299 11 C -0.018 4.018 12 H 0.090 0.910 13 C -0.150 4.150 14 C -0.179 4.179 15 C -0.016 4.016 16 N -0.381 5.381 17 C 0.308 3.692 18 O -0.431 6.431 19 C -0.213 4.213 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.002 0.998 23 H 0.155 0.845 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.232 0.768 31 H 0.106 0.894 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.362 -9.164 0.035 18.753 hybrid contribution 0.925 1.290 -0.890 1.820 sum 17.287 -7.874 -0.855 19.015 Atomic orbital electron populations 1.69898 1.06148 1.26924 1.50895 1.24884 0.94741 0.98951 0.94599 0.86855 0.80342 0.83831 0.78712 1.20183 1.21119 1.19100 1.21034 0.88840 0.94821 1.50867 0.90238 1.20082 0.96651 0.84771 0.95084 1.60633 1.03004 1.17008 1.49218 1.21244 0.90751 0.97927 0.91864 0.91016 1.21153 0.94001 0.97199 1.02625 1.21831 0.96155 1.02920 0.96997 1.21804 1.01163 0.82211 0.96418 1.45971 1.10828 1.14473 1.66827 1.20663 0.87533 0.85519 0.75495 1.90747 1.85282 1.18603 1.48458 1.22925 0.93470 1.02991 1.01955 0.92626 0.95553 0.99805 0.84462 0.90471 0.92024 0.91285 0.90557 0.89852 0.90507 0.76813 0.89373 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 7 C -0.52 -14.92 9.87 -34.44 -0.34 -15.26 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.16 3.99 4.25 -4.97 -0.02 3.96 16 10 N -0.67 -13.35 6.19 -108.60 -0.67 -14.02 16 11 C 0.09 1.50 2.26 -68.29 -0.15 1.35 16 12 H 0.07 1.30 7.51 -51.93 -0.39 0.91 16 13 C -0.11 -1.34 4.86 -27.96 -0.14 -1.48 16 14 C -0.14 -1.25 5.73 -27.36 -0.16 -1.41 16 15 C 0.11 0.84 6.46 -3.67 -0.02 0.82 16 16 N -0.73 -7.96 5.27 -59.90 -0.32 -8.28 16 17 C 0.52 8.10 7.06 -11.26 -0.08 8.02 16 18 O -0.55 -11.18 17.92 5.55 0.10 -11.08 16 19 C -0.17 -2.57 4.90 -27.50 -0.13 -2.70 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 21 H 0.03 0.68 7.11 -51.93 -0.37 0.31 16 22 H -0.02 -0.39 6.69 -51.93 -0.35 -0.74 16 23 H 0.34 6.39 8.48 -39.29 -0.33 6.06 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 26 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.57 6.72 -51.93 -0.35 0.22 16 30 H 0.40 3.79 8.91 -40.82 -0.36 3.43 16 31 H 0.09 1.05 6.78 -51.93 -0.35 0.70 16 32 H 0.10 1.75 7.11 -51.93 -0.37 1.38 16 LS Contribution 258.47 15.07 3.90 3.90 Total: -1.00 -33.90 258.47 -6.59 -40.49 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.56 Total: 3.15 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.14 Total: -4.72 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.21 Total: -49.48 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.10 Total: -11.08 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.90 -6.59 -40.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482558.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.088 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds