Wall clock time and date at job start Sun Mar 29 2020 21:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48502 * 109.47033 * 269.99828 * 3 2 1 5 5 H 1.48506 * 109.47354 * 29.99969 * 3 2 1 6 6 H 1.48507 * 109.47273 * 149.99849 * 3 2 1 7 7 C 1.37876 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00150 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.22164 * 35.60847 * 11 10 9 13 13 C 1.51801 * 109.21812 * 155.00142 * 11 10 9 14 14 C 1.51782 * 113.80719 * 187.13057 * 13 11 10 15 15 C 1.52983 * 110.88264 * 292.99375 * 14 13 11 16 16 N 1.47204 * 108.66257 * 86.47039 * 15 14 13 17 17 C 1.33366 * 120.42573 * 288.04044 * 16 15 14 18 18 O 1.21286 * 119.89094 * 180.28651 * 17 16 15 19 19 C 1.51425 * 120.22028 * 0.28547 * 17 16 15 20 20 H 0.96998 * 119.99627 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 22 22 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 23 23 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 24 24 H 1.09001 * 108.61260 * 308.24389 * 13 11 10 25 25 H 1.08991 * 108.61513 * 66.01452 * 13 11 10 26 26 H 1.09003 * 109.19409 * 53.35980 * 14 13 11 27 27 H 1.09000 * 109.19241 * 172.63366 * 14 13 11 28 28 H 1.09003 * 109.60709 * 206.21986 * 15 14 13 29 29 H 1.08997 * 109.60609 * 326.55065 * 15 14 13 30 30 H 0.96994 * 119.78224 * 108.06161 * 16 15 14 31 31 H 1.09005 * 109.63434 * 311.53242 * 19 17 16 32 32 H 1.08995 * 109.63731 * 190.93383 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0022 12 1 5.8502 -1.7916 0.6020 13 6 5.9340 -3.9305 0.6078 14 6 7.4351 -4.0110 0.8180 15 6 8.1730 -4.0320 -0.5219 16 7 8.3972 -2.6440 -0.9579 17 6 7.3792 -1.8996 -1.3917 18 8 7.5759 -0.7588 -1.7536 19 6 5.9788 -2.4739 -1.4340 20 1 -0.4849 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.6259 -3.0953 -0.7806 24 1 5.4402 -4.0634 1.5704 25 1 5.6308 -4.7443 -0.0508 26 1 7.7631 -3.1460 1.3945 27 1 7.6711 -4.9199 1.3715 28 1 9.1315 -4.5375 -0.4037 29 1 7.5710 -4.5580 -1.2628 30 1 9.2911 -2.2686 -0.9298 31 1 5.9982 -3.4515 -1.9157 32 1 5.3240 -1.8020 -1.9888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877482558.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:59 Heat of formation + Delta-G solvation = -73.632853 kcal Electronic energy + Delta-G solvation = -14399.081672 eV Core-core repulsion = 11971.742692 eV Total energy + Delta-G solvation = -2427.338980 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29920 -38.40080 -36.77334 -34.87781 -33.22171 -31.53778 -28.77601 -27.26047 -24.41023 -22.97107 -21.52252 -20.84400 -19.01129 -18.30168 -17.78905 -16.81104 -16.33842 -15.63702 -15.37948 -15.10597 -14.79745 -14.63747 -14.42320 -13.81635 -13.69218 -13.41699 -12.87888 -12.69540 -12.41784 -11.96305 -11.84376 -11.73307 -11.62842 -11.37433 -11.03077 -10.85595 -10.12307 -9.22724 -8.34912 -6.38111 1.29466 1.30907 1.41989 1.54796 2.28552 2.36002 2.99200 3.25148 3.69297 3.75998 3.94631 4.12593 4.24239 4.38087 4.53001 4.61666 4.72387 4.80145 4.90354 5.00907 5.07313 5.18873 5.37840 5.44514 5.50221 5.89603 5.92943 6.21575 6.48361 6.61967 6.73309 7.20748 7.26999 8.81463 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.041983 B = 0.008157 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.784245 B = 3431.998629 C = 3875.103437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.047 0.953 9 C 0.175 3.825 10 N -0.673 5.673 11 C 0.096 3.904 12 H 0.045 0.955 13 C -0.106 4.106 14 C -0.134 4.134 15 C 0.103 3.897 16 N -0.710 5.710 17 C 0.518 3.482 18 O -0.611 6.611 19 C -0.165 4.165 20 H 0.269 0.731 21 H 0.016 0.984 22 H -0.021 1.021 23 H 0.343 0.657 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.406 0.594 31 H 0.125 0.875 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.128 -11.139 -0.355 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.065 0.935 9 C 0.046 3.954 10 N -0.303 5.303 11 C -0.015 4.015 12 H 0.064 0.936 13 C -0.144 4.144 14 C -0.173 4.173 15 C -0.019 4.019 16 N -0.360 5.360 17 C 0.304 3.696 18 O -0.494 6.494 19 C -0.207 4.207 20 H 0.078 0.922 21 H 0.034 0.966 22 H -0.003 1.003 23 H 0.162 0.838 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.143 0.857 29 H 0.108 0.892 30 H 0.242 0.758 31 H 0.143 0.857 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.810 -10.631 0.168 21.607 hybrid contribution 0.173 1.583 -0.899 1.829 sum 18.983 -9.048 -0.731 21.041 Atomic orbital electron populations 1.70018 1.07766 1.28171 1.52198 1.25720 0.95544 1.02685 0.94290 0.85835 0.79188 0.79548 0.79075 1.19532 1.19903 1.18539 1.21309 0.91032 0.93677 1.50320 0.93465 1.19752 0.93976 0.87502 0.94175 1.60547 1.05876 1.14157 1.49720 1.21326 0.87992 0.99614 0.92552 0.93623 1.21126 0.96377 0.94965 1.01961 1.21813 0.93522 1.04000 0.97926 1.22165 1.03638 0.80259 0.95853 1.45950 1.10179 1.15473 1.64442 1.20708 0.88447 0.85004 0.75400 1.90719 1.86120 1.21069 1.51461 1.22794 0.92863 1.04158 1.00888 0.92226 0.96578 1.00319 0.83817 0.91727 0.89930 0.92647 0.87226 0.85694 0.89160 0.75761 0.85652 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.94 46.77 27.47 68.60 1.88 48.65 16 4 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.26 -12.67 6.54 99.48 0.65 -12.02 16 7 C -0.53 -31.06 9.87 25.60 0.25 -30.81 16 8 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 9 C 0.17 8.74 4.25 85.56 0.36 9.11 16 10 N -0.67 -26.89 6.19 -497.51 -3.08 -29.97 16 11 C 0.10 2.99 2.26 44.54 0.10 3.09 16 12 H 0.05 1.65 7.51 -2.39 -0.02 1.64 16 13 C -0.11 -2.25 4.86 29.80 0.14 -2.11 16 14 C -0.13 -1.85 5.73 30.19 0.17 -1.67 16 15 C 0.10 1.10 6.46 86.24 0.56 1.66 16 16 N -0.71 -13.44 5.27 -462.59 -2.44 -15.88 16 17 C 0.52 15.49 7.06 88.11 0.62 16.11 16 18 O -0.61 -24.90 17.92 -3.05 -0.05 -24.96 16 19 C -0.17 -4.75 4.90 30.10 0.15 -4.61 16 20 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 21 H 0.02 0.84 7.11 -2.39 -0.02 0.82 16 22 H -0.02 -1.06 6.69 -2.39 -0.02 -1.07 16 23 H 0.34 12.97 8.48 -89.70 -0.76 12.21 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.44 7.88 -2.39 -0.02 1.42 16 26 H 0.05 0.96 8.05 -2.39 -0.02 0.94 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.82 6.72 -2.39 -0.02 0.81 16 30 H 0.41 6.61 8.91 -92.71 -0.83 5.78 16 31 H 0.13 2.59 6.78 -2.38 -0.02 2.58 16 32 H 0.07 2.42 7.11 -2.39 -0.02 2.40 16 Total: -1.00 -76.55 258.47 -1.08 -77.63 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -0.51 Total: 11.65 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 2.83 Total: -7.82 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -5.22 Total: -105.15 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.96 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.88 Total: 48.65 kcal Total: -76.55 -1.08 -77.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482558.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.997 kcal (2) G-P(sol) polarization free energy of solvation -76.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds