Wall clock time and date at job start Sun Mar 29 2020 21:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47143 * 2 1 4 4 H 1.08994 * 109.59671 * 331.83775 * 3 2 1 5 5 C 1.51338 * 109.59570 * 211.52540 * 3 2 1 6 6 O 1.21283 * 120.34649 * 128.49824 * 5 3 2 7 7 N 1.34243 * 119.30153 * 308.51677 * 5 3 2 8 8 C 1.46706 * 120.37336 * 357.12506 * 7 5 3 9 9 C 1.53037 * 109.06575 * 288.72569 * 8 7 5 10 10 C 1.52449 * 110.06116 * 88.75210 * 9 8 7 11 11 N 1.46087 * 111.50251 * 297.10497 * 10 9 8 12 12 C 1.36937 * 119.93293 * 243.10146 * 11 10 9 13 13 H 1.08000 * 119.99751 * 214.56430 * 12 11 10 14 14 C 1.38817 * 119.99870 * 34.56232 * 12 11 10 15 15 N 1.31614 * 120.00104 * 13.28218 * 14 12 11 16 16 Si 1.86799 * 119.99560 * 193.28326 * 14 12 11 17 17 H 1.48506 * 109.47418 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47314 * 120.00341 * 16 14 12 19 19 H 1.48506 * 109.47194 * 239.99914 * 16 14 12 20 20 H 1.09003 * 109.46702 * 299.99880 * 1 2 3 21 21 H 1.08997 * 109.47053 * 59.99773 * 1 2 3 22 22 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47193 * 239.99854 * 2 1 3 24 24 H 1.08999 * 109.47326 * 119.99764 * 2 1 3 25 25 H 0.97006 * 119.81341 * 177.10113 * 7 5 3 26 26 H 1.08998 * 109.53991 * 168.84626 * 8 7 5 27 27 H 1.09000 * 109.53450 * 48.59920 * 8 7 5 28 28 H 1.09006 * 109.34925 * 208.89306 * 9 8 7 29 29 H 1.08998 * 109.35410 * 328.60276 * 9 8 7 30 30 H 1.08994 * 109.07226 * 57.77924 * 10 9 8 31 31 H 1.08996 * 109.07441 * 176.73379 * 10 9 8 32 32 H 0.96997 * 119.99986 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3084 2.0889 -0.4846 5 6 3.3550 1.5160 -0.7455 6 8 3.5126 2.3292 -1.6313 7 7 4.3450 0.6712 -0.4162 8 6 4.1773 -0.2704 0.6963 9 6 4.1999 0.5051 2.0154 10 6 2.7914 0.9629 2.3770 11 7 2.2566 1.8877 1.3806 12 6 1.9545 3.1752 1.7359 13 1 1.1146 3.6783 1.2800 14 6 2.7279 3.8337 2.6822 15 7 3.8904 3.3345 3.0449 16 14 2.1184 5.4283 3.4406 17 1 0.7929 5.7743 2.8674 18 1 1.9941 5.2614 4.9109 19 1 3.0841 6.5174 3.1461 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 5.1758 0.6832 -0.9169 26 1 4.9910 -0.9956 0.6858 27 1 3.2239 -0.7888 0.5944 28 1 4.5846 -0.1387 2.8064 29 1 4.8472 1.3759 1.9114 30 1 2.1398 0.0917 2.4435 31 1 2.8168 1.4620 3.3456 32 1 4.4309 3.7948 3.7058 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933221329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:15 Heat of formation + Delta-G solvation = -6.284877 kcal Electronic energy + Delta-G solvation = -15368.036167 eV Core-core repulsion = 12943.617614 eV Total energy + Delta-G solvation = -2424.418553 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50170 -36.37241 -34.20650 -33.07858 -30.92358 -29.90930 -26.35409 -25.23387 -22.84842 -22.34623 -19.55620 -18.80592 -17.07753 -16.23314 -15.98566 -14.75040 -14.22639 -13.90431 -13.48100 -13.26802 -12.83744 -12.50862 -12.21558 -11.92136 -11.54719 -11.37863 -10.93583 -10.84389 -10.68920 -10.48328 -10.31005 -10.10123 -9.72888 -9.38380 -8.95992 -8.53480 -8.15605 -6.68340 -5.88101 -3.39222 3.34059 3.43033 3.45112 3.60955 4.18921 4.45919 5.25755 5.33171 5.40533 5.57595 5.58792 5.69354 5.93573 5.99646 6.08048 6.26028 6.30536 6.41719 6.61395 6.63210 6.64366 6.79065 6.83883 7.45600 7.59945 7.65416 7.80362 8.12801 8.41915 9.15085 9.17618 9.70938 10.25605 11.18826 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030727 B = 0.012876 C = 0.012096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.042953 B = 2174.070622 C = 2314.321211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 C 0.156 3.844 4 H 0.088 0.912 5 C 0.509 3.491 6 O -0.574 6.574 7 N -0.727 5.727 8 C 0.087 3.913 9 C -0.155 4.155 10 C 0.168 3.832 11 N -0.566 5.566 12 C -0.263 4.263 13 H 0.068 0.932 14 C 0.013 3.987 15 N -0.893 5.893 16 Si 0.907 3.093 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.289 1.289 20 H 0.062 0.938 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.382 0.618 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.008 0.992 31 H 0.086 0.914 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -9.200 -1.431 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.183 4.183 3 C 0.045 3.955 4 H 0.106 0.894 5 C 0.295 3.705 6 O -0.452 6.452 7 N -0.378 5.378 8 C -0.037 4.037 9 C -0.195 4.195 10 C 0.043 3.957 11 N -0.288 5.288 12 C -0.393 4.393 13 H 0.086 0.914 14 C -0.188 4.188 15 N -0.536 5.536 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.215 1.215 19 H -0.216 1.216 20 H 0.081 0.919 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.216 0.784 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.026 0.974 31 H 0.104 0.896 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.972 -8.704 -1.638 9.074 hybrid contribution 0.547 0.910 0.307 1.105 sum -1.426 -7.794 -1.331 8.034 Atomic orbital electron populations 1.21729 0.95660 1.00518 1.02177 1.22272 0.96395 0.97587 1.02042 1.21105 0.91669 0.94921 0.87841 0.89399 1.22529 0.88296 0.78442 0.81265 1.90593 1.83646 1.37317 1.33599 1.45980 1.17799 1.39027 1.35042 1.22252 1.02423 0.91470 0.87534 1.22394 1.02302 1.00558 0.94293 1.20457 0.89666 0.90753 0.94863 1.43946 1.73985 1.09665 1.01207 1.19263 1.08383 0.89736 1.21903 0.91383 1.25237 0.94644 0.97703 1.01171 1.69984 1.10194 1.39978 1.33408 0.86159 0.78406 0.83150 0.78656 1.20019 1.21486 1.21625 0.91931 0.93224 0.93576 0.92619 0.89264 0.78405 0.91921 0.89444 0.93096 0.88810 0.97407 0.89599 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.73 37.16 0.36 -1.76 16 2 C -0.14 -2.41 3.93 -26.73 -0.10 -2.52 16 3 C 0.16 3.35 2.62 -68.68 -0.18 3.17 16 4 H 0.09 2.00 7.63 -51.93 -0.40 1.60 16 5 C 0.51 11.69 6.85 -10.91 -0.07 11.61 16 6 O -0.57 -15.28 17.95 5.55 0.10 -15.19 16 7 N -0.73 -13.91 5.29 -60.03 -0.32 -14.23 16 8 C 0.09 1.43 6.34 -3.91 -0.02 1.40 16 9 C -0.16 -3.06 5.73 -26.99 -0.15 -3.21 16 10 C 0.17 3.66 4.66 -4.55 -0.02 3.64 16 11 N -0.57 -13.59 2.58 -167.16 -0.43 -14.02 16 12 C -0.26 -7.13 9.48 -15.06 -0.14 -7.27 16 13 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 14 C 0.01 0.34 4.92 -17.43 -0.09 0.25 16 15 N -0.89 -24.80 10.22 55.49 0.57 -24.23 16 16 Si 0.91 21.61 29.57 -169.99 -5.03 16.58 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.86 7.70 -51.93 -0.40 0.46 16 24 H 0.09 1.45 3.42 -51.93 -0.18 1.27 16 25 H 0.38 6.71 8.93 -40.82 -0.36 6.35 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.34 3.65 -51.93 -0.19 1.15 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 2.26 7.03 -51.93 -0.37 1.89 16 30 H 0.01 0.16 6.33 -51.93 -0.33 -0.17 16 31 H 0.09 2.13 6.13 -51.93 -0.32 1.82 16 32 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 LS Contribution 248.88 15.07 3.75 3.75 Total: -1.00 -30.92 248.88 -5.98 -36.91 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.20 Total: 5.10 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.43 Total: 5.32 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.18 Total: -52.48 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.10 Total: -15.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.92 -5.98 -36.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933221329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.621 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds