Wall clock time and date at job start Sun Mar 29 2020 21:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47143 * 2 1 4 4 H 1.08994 * 109.59671 * 331.83775 * 3 2 1 5 5 C 1.51338 * 109.59570 * 211.52540 * 3 2 1 6 6 O 1.21283 * 120.34649 * 128.49824 * 5 3 2 7 7 N 1.34243 * 119.30153 * 308.51677 * 5 3 2 8 8 C 1.46706 * 120.37336 * 357.12506 * 7 5 3 9 9 C 1.53037 * 109.06575 * 288.72569 * 8 7 5 10 10 C 1.52449 * 110.06116 * 88.75210 * 9 8 7 11 11 N 1.46087 * 111.50251 * 297.10497 * 10 9 8 12 12 C 1.36937 * 119.93293 * 243.10146 * 11 10 9 13 13 H 1.08000 * 119.99751 * 214.56430 * 12 11 10 14 14 C 1.38817 * 119.99870 * 34.56232 * 12 11 10 15 15 N 1.31614 * 120.00104 * 13.28218 * 14 12 11 16 16 Si 1.86799 * 119.99560 * 193.28326 * 14 12 11 17 17 H 1.48506 * 109.47418 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47314 * 120.00341 * 16 14 12 19 19 H 1.48506 * 109.47194 * 239.99914 * 16 14 12 20 20 H 1.09003 * 109.46702 * 299.99880 * 1 2 3 21 21 H 1.08997 * 109.47053 * 59.99773 * 1 2 3 22 22 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47193 * 239.99854 * 2 1 3 24 24 H 1.08999 * 109.47326 * 119.99764 * 2 1 3 25 25 H 0.97006 * 119.81341 * 177.10113 * 7 5 3 26 26 H 1.08998 * 109.53991 * 168.84626 * 8 7 5 27 27 H 1.09000 * 109.53450 * 48.59920 * 8 7 5 28 28 H 1.09006 * 109.34925 * 208.89306 * 9 8 7 29 29 H 1.08998 * 109.35410 * 328.60276 * 9 8 7 30 30 H 1.08994 * 109.07226 * 57.77924 * 10 9 8 31 31 H 1.08996 * 109.07441 * 176.73379 * 10 9 8 32 32 H 0.96997 * 119.99986 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3084 2.0889 -0.4846 5 6 3.3550 1.5160 -0.7455 6 8 3.5126 2.3292 -1.6313 7 7 4.3450 0.6712 -0.4162 8 6 4.1773 -0.2704 0.6963 9 6 4.1999 0.5051 2.0154 10 6 2.7914 0.9629 2.3770 11 7 2.2566 1.8877 1.3806 12 6 1.9545 3.1752 1.7359 13 1 1.1146 3.6783 1.2800 14 6 2.7279 3.8337 2.6822 15 7 3.8904 3.3345 3.0449 16 14 2.1184 5.4283 3.4406 17 1 0.7929 5.7743 2.8674 18 1 1.9941 5.2614 4.9109 19 1 3.0841 6.5174 3.1461 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 5.1758 0.6832 -0.9169 26 1 4.9910 -0.9956 0.6858 27 1 3.2239 -0.7888 0.5944 28 1 4.5846 -0.1387 2.8064 29 1 4.8472 1.3759 1.9114 30 1 2.1398 0.0917 2.4435 31 1 2.8168 1.4620 3.3456 32 1 4.4309 3.7948 3.7058 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933221329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:15 Heat of formation + Delta-G solvation = -28.569485 kcal Electronic energy + Delta-G solvation = -15369.002500 eV Core-core repulsion = 12943.617614 eV Total energy + Delta-G solvation = -2425.384886 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.19016 -38.18744 -35.91170 -34.69063 -32.73197 -31.60104 -28.01572 -26.90401 -24.69059 -23.81033 -21.11901 -20.50401 -18.96640 -17.88943 -17.80217 -16.47069 -16.05978 -15.52138 -15.30227 -14.78225 -14.40687 -14.13293 -13.87666 -13.32585 -13.25053 -13.03131 -12.74086 -12.58073 -12.36419 -12.11116 -12.09658 -11.79991 -11.41660 -10.97792 -10.69280 -10.53016 -9.77151 -8.60272 -7.92597 -5.45879 1.42157 1.45980 1.55231 1.81234 2.47825 2.65700 3.25276 3.65324 3.82943 4.14935 4.27731 4.32004 4.45631 4.55500 4.74133 4.89683 4.90885 5.01094 5.08933 5.16777 5.26972 5.28423 5.50375 5.61793 5.68501 6.00041 6.12352 6.40011 6.48271 7.16108 7.45903 7.78363 8.26171 9.10334 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030727 B = 0.012876 C = 0.012096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.042953 B = 2174.070622 C = 2314.321211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.153 3.847 4 H 0.065 0.935 5 C 0.498 3.502 6 O -0.623 6.623 7 N -0.715 5.715 8 C 0.089 3.911 9 C -0.149 4.149 10 C 0.166 3.834 11 N -0.577 5.577 12 C -0.279 4.279 13 H 0.056 0.944 14 C -0.032 4.032 15 N -0.910 5.910 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.298 1.298 20 H 0.044 0.956 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.391 0.609 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -11.392 -1.276 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.042 3.958 4 H 0.083 0.917 5 C 0.284 3.716 6 O -0.505 6.505 7 N -0.365 5.365 8 C -0.034 4.034 9 C -0.189 4.189 10 C 0.042 3.958 11 N -0.300 5.300 12 C -0.410 4.410 13 H 0.074 0.926 14 C -0.230 4.230 15 N -0.554 5.554 16 Si 0.791 3.209 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.225 1.225 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.226 0.774 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.226 -10.949 -1.462 11.269 hybrid contribution 0.637 1.563 0.252 1.706 sum -1.590 -9.387 -1.209 9.597 Atomic orbital electron populations 1.21699 0.94202 1.02426 1.01362 1.22196 0.97610 0.93909 1.03365 1.21186 0.90741 0.97712 0.86126 0.91723 1.22859 0.89525 0.78358 0.80858 1.90559 1.84574 1.39472 1.35905 1.45962 1.17170 1.38233 1.35125 1.22467 1.05527 0.90910 0.84452 1.22256 0.99798 0.99680 0.97186 1.20502 0.91648 0.90928 0.92748 1.44050 1.74325 1.09061 1.02581 1.19428 1.08147 0.91327 1.22048 0.92637 1.25867 0.94953 1.00367 1.01852 1.70122 1.10789 1.40807 1.33661 0.85292 0.77774 0.79717 0.78113 1.19497 1.20748 1.22513 0.93652 0.93274 0.90213 0.90644 0.88185 0.77418 0.87394 0.87423 0.90365 0.93416 0.94191 0.93137 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.73 71.98 0.70 -3.05 16 2 C -0.13 -4.03 3.93 30.60 0.12 -3.91 16 3 C 0.15 6.51 2.62 44.42 0.12 6.63 16 4 H 0.06 3.01 7.63 -2.39 -0.02 2.99 16 5 C 0.50 22.67 6.85 87.94 0.60 23.27 16 6 O -0.62 -33.79 17.95 -3.04 -0.05 -33.84 16 7 N -0.71 -25.95 5.29 -462.53 -2.45 -28.39 16 8 C 0.09 2.58 6.34 86.35 0.55 3.12 16 9 C -0.15 -5.56 5.73 30.42 0.17 -5.39 16 10 C 0.17 7.06 4.66 86.27 0.40 7.46 16 11 N -0.58 -27.71 2.58 -682.77 -1.76 -29.47 16 12 C -0.28 -15.42 9.48 84.03 0.80 -14.63 16 13 H 0.06 3.13 7.86 -2.91 -0.02 3.10 16 14 C -0.03 -1.79 4.92 84.86 0.42 -1.38 16 15 N -0.91 -51.47 10.22 21.65 0.22 -51.25 16 16 Si 0.96 45.18 29.57 68.60 2.03 47.21 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 20 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.08 2.02 7.70 -2.39 -0.02 2.01 16 24 H 0.10 2.81 3.42 -2.39 -0.01 2.80 16 25 H 0.39 12.98 8.93 -92.70 -0.83 12.15 16 26 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.11 2.76 3.65 -2.39 -0.01 2.75 16 28 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.05 2.26 7.03 -2.39 -0.02 2.25 16 30 H 0.04 1.44 6.33 -2.39 -0.02 1.43 16 31 H 0.05 2.51 6.13 -2.39 -0.01 2.49 16 32 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -69.13 248.88 2.17 -66.96 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.30 Total: 16.65 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 3.88 Total: 12.14 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.98 Total: -109.12 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.05 Total: -33.84 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -69.13 2.17 -66.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933221329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.390 kcal (2) G-P(sol) polarization free energy of solvation -69.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds