Wall clock time and date at job start Sun Mar 29 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21289 * 120.00038 * 2 1 4 4 N 1.34774 * 119.99986 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99934 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47193 * 184.67047 * 5 4 2 7 7 H 1.09001 * 110.00052 * 54.37155 * 6 5 4 8 8 C 1.54338 * 109.98896 * 293.34338 * 6 5 4 9 9 C 1.55159 * 103.02060 * 218.66559 * 8 6 5 10 10 C 1.54913 * 101.58177 * 35.30279 * 9 8 6 11 11 N 1.47019 * 109.88653 * 175.47430 * 6 5 4 12 12 C 1.36940 * 125.64752 * 298.39669 * 11 6 5 13 13 H 1.08003 * 119.99604 * 345.99577 * 12 11 6 14 14 C 1.38806 * 120.00134 * 165.99949 * 12 11 6 15 15 N 1.31628 * 120.00114 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00032 * 179.72159 * 14 12 11 17 17 H 1.48502 * 109.47144 * 59.99889 * 16 14 12 18 18 H 1.48506 * 109.47333 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47137 * 299.99508 * 16 14 12 20 20 H 1.09000 * 109.46582 * 270.00184 * 1 2 3 21 21 H 1.08994 * 109.47172 * 29.99877 * 1 2 3 22 22 H 1.08999 * 109.46897 * 150.00364 * 1 2 3 23 23 H 0.97000 * 120.00618 * 0.02562 * 4 2 1 24 24 H 1.08989 * 109.47209 * 64.66651 * 5 4 2 25 25 H 1.09008 * 109.46967 * 304.66238 * 5 4 2 26 26 H 1.09000 * 110.85353 * 100.19944 * 8 6 5 27 27 H 1.09002 * 110.51257 * 336.97372 * 8 6 5 28 28 H 1.09000 * 111.00704 * 277.23073 * 9 8 6 29 29 H 1.08993 * 111.00711 * 153.37719 * 9 8 6 30 30 H 1.08994 * 110.36947 * 204.15324 * 10 9 8 31 31 H 1.09010 * 110.45848 * 81.87702 * 10 9 8 32 32 H 0.96994 * 119.99915 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6049 -0.1167 7 1 3.7173 -3.0863 -0.9908 8 6 3.7904 -3.3992 1.1551 9 6 5.0457 -4.2805 1.3896 10 6 6.1814 -3.3334 0.9282 11 7 5.6220 -2.6081 -0.2270 12 6 6.3479 -2.0283 -1.2330 13 1 5.8562 -1.7146 -2.1420 14 6 7.7156 -1.8438 -1.0845 15 7 8.3148 -2.2257 0.0235 16 14 8.7071 -1.0600 -2.4600 17 1 8.1880 0.3052 -2.7284 18 1 10.1337 -0.9760 -2.0561 19 1 8.5879 -1.8854 -3.6886 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6960 -2.0073 0.0005 24 1 4.0096 -0.7269 0.9283 25 1 4.0089 -0.5832 -0.8459 26 1 2.9101 -4.0192 0.9858 27 1 3.6315 -2.7231 1.9952 28 1 5.0125 -5.1795 0.7741 29 1 5.1532 -4.5347 2.4440 30 1 7.0566 -3.9089 0.6271 31 1 6.4424 -2.6356 1.7240 32 1 9.2705 -2.0971 0.1271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027710353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:53 Heat of formation + Delta-G solvation = -23.138082 kcal Electronic energy + Delta-G solvation = -14407.939970 eV Core-core repulsion = 11982.790608 eV Total energy + Delta-G solvation = -2425.149363 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27979 -37.57379 -34.17740 -32.48157 -30.46753 -29.40087 -28.02552 -24.80631 -23.63571 -20.52950 -20.01271 -19.45241 -16.99501 -16.28343 -15.90085 -15.13103 -14.80831 -14.19913 -13.85785 -13.25089 -13.06085 -12.57598 -12.24476 -12.03222 -11.87269 -11.64767 -11.31913 -10.94336 -10.77081 -10.20951 -10.12761 -9.92591 -9.84628 -9.72079 -9.53544 -8.67327 -8.54929 -6.84282 -5.76089 -3.12834 2.93112 3.41011 3.46039 3.46996 3.60863 4.49754 5.01497 5.23633 5.34455 5.39356 5.41243 5.50978 5.63032 5.80655 5.82182 6.06301 6.15269 6.23651 6.46186 6.55365 6.63068 6.74032 6.83133 7.07362 7.51938 7.60391 7.79336 7.85570 8.26214 8.55154 9.17948 9.78418 10.45415 11.35665 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029480 B = 0.009377 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.582831 B = 2985.383865 C = 3737.178361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.501 3.499 3 O -0.553 6.553 4 N -0.724 5.724 5 C 0.107 3.893 6 C 0.151 3.849 7 H 0.037 0.963 8 C -0.127 4.127 9 C -0.148 4.148 10 C 0.171 3.829 11 N -0.589 5.589 12 C -0.234 4.234 13 H 0.075 0.925 14 C -0.002 4.002 15 N -0.917 5.917 16 Si 0.911 3.089 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.284 1.284 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.395 0.605 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 -2.816 1.766 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.287 3.713 3 O -0.431 6.431 4 N -0.376 5.376 5 C -0.018 4.018 6 C 0.043 3.957 7 H 0.055 0.945 8 C -0.165 4.165 9 C -0.187 4.187 10 C 0.046 3.954 11 N -0.314 5.314 12 C -0.363 4.363 13 H 0.093 0.907 14 C -0.199 4.199 15 N -0.563 5.563 16 Si 0.741 3.259 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.211 1.211 20 H 0.107 0.893 21 H 0.107 0.893 22 H 0.095 0.905 23 H 0.229 0.771 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.175 -2.020 1.723 12.461 hybrid contribution 0.324 0.113 -0.641 0.727 sum -11.851 -1.907 1.082 12.052 Atomic orbital electron populations 1.21873 0.92518 1.04416 1.04293 1.20771 0.90305 0.83949 0.76293 1.90727 1.70865 1.31524 1.49961 1.46237 1.08713 1.08038 1.74611 1.22223 0.76777 1.00530 1.02311 1.21135 0.87503 0.91630 0.95430 0.94502 1.22624 0.97714 0.98320 0.97849 1.23001 0.97246 0.98683 0.99766 1.21478 0.93354 0.91793 0.88734 1.44501 0.98337 1.63064 1.25481 1.18954 0.90014 1.33373 0.93930 0.90675 1.24907 0.97081 1.00558 0.97328 1.69928 1.09629 1.51279 1.25474 0.86216 0.79145 0.79478 0.81045 1.20932 1.21521 1.21060 0.89276 0.89322 0.90467 0.77131 0.92143 0.91206 0.92361 0.91863 0.92285 0.92332 0.90769 0.95697 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.30 36.01 0.37 -1.30 16 2 C 0.50 7.86 7.94 -10.99 -0.09 7.77 16 3 O -0.55 -11.63 17.10 5.55 0.09 -11.54 16 4 N -0.72 -10.93 5.41 -60.29 -0.33 -11.26 16 5 C 0.11 2.11 5.10 -4.04 -0.02 2.09 16 6 C 0.15 3.01 3.22 -66.95 -0.22 2.80 16 7 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.13 -2.10 6.09 -24.89 -0.15 -2.25 16 9 C -0.15 -2.71 7.09 -24.58 -0.17 -2.88 16 10 C 0.17 4.10 5.43 -2.53 -0.01 4.09 16 11 N -0.59 -14.79 3.13 -162.56 -0.51 -15.30 16 12 C -0.23 -6.51 9.72 -15.06 -0.15 -6.66 16 13 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 14 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 15 N -0.92 -26.90 10.54 55.49 0.58 -26.32 16 16 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.40 4.56 8.25 -40.82 -0.34 4.22 16 24 H 0.06 1.32 8.04 -51.94 -0.42 0.90 16 25 H 0.07 1.60 7.86 -51.92 -0.41 1.19 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.03 7.77 -51.93 -0.40 0.63 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.98 6.86 -51.93 -0.36 1.62 16 31 H 0.02 0.65 8.08 -51.92 -0.42 0.23 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -32.70 267.38 -6.53 -39.23 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.85 Total: 0.33 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.53 Total: 3.52 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.25 Total: -52.87 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.70 -6.53 -39.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027710353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.087 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds