Wall clock time and date at job start Sun Mar 29 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21289 * 120.00038 * 2 1 4 4 N 1.34774 * 119.99986 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99934 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47193 * 184.67047 * 5 4 2 7 7 H 1.09001 * 110.00052 * 54.37155 * 6 5 4 8 8 C 1.54338 * 109.98896 * 293.34338 * 6 5 4 9 9 C 1.55159 * 103.02060 * 218.66559 * 8 6 5 10 10 C 1.54913 * 101.58177 * 35.30279 * 9 8 6 11 11 N 1.47019 * 109.88653 * 175.47430 * 6 5 4 12 12 C 1.36940 * 125.64752 * 298.39669 * 11 6 5 13 13 H 1.08003 * 119.99604 * 345.99577 * 12 11 6 14 14 C 1.38806 * 120.00134 * 165.99949 * 12 11 6 15 15 N 1.31628 * 120.00114 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00032 * 179.72159 * 14 12 11 17 17 H 1.48502 * 109.47144 * 59.99889 * 16 14 12 18 18 H 1.48506 * 109.47333 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47137 * 299.99508 * 16 14 12 20 20 H 1.09000 * 109.46582 * 270.00184 * 1 2 3 21 21 H 1.08994 * 109.47172 * 29.99877 * 1 2 3 22 22 H 1.08999 * 109.46897 * 150.00364 * 1 2 3 23 23 H 0.97000 * 120.00618 * 0.02562 * 4 2 1 24 24 H 1.08989 * 109.47209 * 64.66651 * 5 4 2 25 25 H 1.09008 * 109.46967 * 304.66238 * 5 4 2 26 26 H 1.09000 * 110.85353 * 100.19944 * 8 6 5 27 27 H 1.09002 * 110.51257 * 336.97372 * 8 6 5 28 28 H 1.09000 * 111.00704 * 277.23073 * 9 8 6 29 29 H 1.08993 * 111.00711 * 153.37719 * 9 8 6 30 30 H 1.08994 * 110.36947 * 204.15324 * 10 9 8 31 31 H 1.09010 * 110.45848 * 81.87702 * 10 9 8 32 32 H 0.96994 * 119.99915 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6049 -0.1167 7 1 3.7173 -3.0863 -0.9908 8 6 3.7904 -3.3992 1.1551 9 6 5.0457 -4.2805 1.3896 10 6 6.1814 -3.3334 0.9282 11 7 5.6220 -2.6081 -0.2270 12 6 6.3479 -2.0283 -1.2330 13 1 5.8562 -1.7146 -2.1420 14 6 7.7156 -1.8438 -1.0845 15 7 8.3148 -2.2257 0.0235 16 14 8.7071 -1.0600 -2.4600 17 1 8.1880 0.3052 -2.7284 18 1 10.1337 -0.9760 -2.0561 19 1 8.5879 -1.8854 -3.6886 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6960 -2.0073 0.0005 24 1 4.0096 -0.7269 0.9283 25 1 4.0089 -0.5832 -0.8459 26 1 2.9101 -4.0192 0.9858 27 1 3.6315 -2.7231 1.9952 28 1 5.0125 -5.1795 0.7741 29 1 5.1532 -4.5347 2.4440 30 1 7.0566 -3.9089 0.6271 31 1 6.4424 -2.6356 1.7240 32 1 9.2705 -2.0971 0.1271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027710353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:53 Heat of formation + Delta-G solvation = -47.384735 kcal Electronic energy + Delta-G solvation = -14408.991384 eV Core-core repulsion = 11982.790608 eV Total energy + Delta-G solvation = -2426.200776 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66667 -39.22728 -35.72580 -34.41737 -31.78408 -31.14864 -29.40911 -26.68930 -25.32434 -22.11060 -21.46843 -21.12056 -18.83546 -17.69950 -17.40926 -16.70455 -16.41998 -15.84616 -15.62749 -14.76801 -14.43819 -14.03726 -13.66275 -13.53201 -13.25227 -13.08463 -12.87608 -12.85052 -12.67100 -12.07198 -11.87340 -11.69460 -11.47689 -11.39934 -10.94968 -10.69919 -10.08119 -8.88161 -7.90425 -5.28134 1.42098 1.45858 1.51459 1.69470 2.30520 2.50717 3.28782 3.72012 3.91825 3.99406 4.05634 4.26731 4.42810 4.52610 4.60432 4.70389 4.74916 4.95935 4.99434 5.11307 5.15410 5.24366 5.39920 5.45353 5.58271 5.65953 5.77244 6.21763 6.66948 7.07299 7.35504 7.74667 8.39919 9.20045 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029480 B = 0.009377 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.582831 B = 2985.383865 C = 3737.178361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.493 3.507 3 O -0.615 6.615 4 N -0.708 5.708 5 C 0.125 3.875 6 C 0.147 3.853 7 H 0.051 0.949 8 C -0.112 4.112 9 C -0.133 4.133 10 C 0.171 3.829 11 N -0.613 5.613 12 C -0.243 4.243 13 H 0.075 0.925 14 C -0.060 4.060 15 N -0.946 5.946 16 Si 0.972 3.028 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.272 1.272 20 H 0.113 0.887 21 H 0.091 0.909 22 H 0.113 0.887 23 H 0.418 0.582 24 H 0.031 0.969 25 H 0.028 0.972 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.037 0.963 31 H -0.010 1.010 32 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 -4.082 1.644 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.282 3.718 3 O -0.498 6.498 4 N -0.361 5.361 5 C -0.002 4.002 6 C 0.040 3.960 7 H 0.069 0.931 8 C -0.150 4.150 9 C -0.171 4.171 10 C 0.046 3.954 11 N -0.337 5.337 12 C -0.372 4.372 13 H 0.093 0.907 14 C -0.254 4.254 15 N -0.594 5.594 16 Si 0.800 3.200 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.198 1.198 20 H 0.132 0.868 21 H 0.110 0.890 22 H 0.131 0.869 23 H 0.256 0.744 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.008 0.992 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.128 -3.333 1.595 15.573 hybrid contribution 1.156 0.513 -0.606 1.403 sum -13.972 -2.820 0.989 14.288 Atomic orbital electron populations 1.21875 0.86894 1.06357 1.06419 1.21965 0.92833 0.82706 0.74260 1.90707 1.72661 1.33758 1.52655 1.45992 1.06542 1.09477 1.74100 1.21651 0.79846 0.99643 0.99013 1.21361 0.84626 0.91980 0.98031 0.93104 1.22621 0.98621 0.97975 0.95783 1.22868 0.95174 0.97767 1.01332 1.21305 0.94700 0.91794 0.87553 1.44783 1.00786 1.63154 1.25020 1.19272 0.90592 1.32547 0.94806 0.90740 1.25689 0.98263 1.01773 0.99661 1.70135 1.09299 1.52750 1.27231 0.85253 0.77394 0.78480 0.78842 1.21005 1.21698 1.19805 0.86831 0.89043 0.86877 0.74398 0.95037 0.95331 0.87284 0.91561 0.91056 0.89797 0.94425 0.99202 0.94233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.30 71.24 0.73 -1.68 16 2 C 0.49 14.62 7.94 87.66 0.70 15.32 16 3 O -0.62 -26.19 17.10 -3.06 -0.05 -26.24 16 4 N -0.71 -19.82 5.41 -463.05 -2.50 -22.32 16 5 C 0.13 4.98 5.10 86.38 0.44 5.42 16 6 C 0.15 5.66 3.22 45.35 0.15 5.80 16 7 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 8 C -0.11 -3.30 6.09 31.79 0.19 -3.11 16 9 C -0.13 -4.53 7.09 31.99 0.23 -4.31 16 10 C 0.17 8.40 5.43 86.86 0.47 8.87 16 11 N -0.61 -31.26 3.13 -668.23 -2.09 -33.35 16 12 C -0.24 -13.85 9.72 84.03 0.82 -13.03 16 13 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 14 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 15 N -0.95 -57.88 10.54 21.65 0.23 -57.66 16 16 Si 0.97 47.15 29.55 68.60 2.03 49.17 16 17 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 18 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.42 7.83 8.25 -92.71 -0.76 7.07 16 24 H 0.03 1.42 8.04 -2.39 -0.02 1.40 16 25 H 0.03 1.35 7.86 -2.38 -0.02 1.33 16 26 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.07 1.94 7.77 -2.39 -0.02 1.93 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.04 2.08 6.86 -2.39 -0.02 2.06 16 31 H -0.01 -0.55 8.08 -2.38 -0.02 -0.57 16 32 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -76.69 267.38 2.13 -74.56 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.33 Total: 5.60 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 4.19 Total: 10.24 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -4.36 Total: -113.33 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -76.69 2.13 -74.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027710353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.175 kcal (2) G-P(sol) polarization free energy of solvation -76.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds