Wall clock time and date at job start Sun Mar 29 2020 22:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37090 * 120.00154 * 2 1 4 4 H 1.07997 * 119.99950 * 201.58095 * 3 2 1 5 5 C 1.38951 * 120.00288 * 21.57682 * 3 2 1 6 6 N 1.31413 * 119.99812 * 15.75851 * 5 3 2 7 7 Si 1.86797 * 120.00086 * 195.76280 * 5 3 2 8 8 H 1.48500 * 109.46984 * 90.00095 * 7 5 3 9 9 H 1.48500 * 109.46862 * 209.99707 * 7 5 3 10 10 H 1.48492 * 109.47059 * 329.99695 * 7 5 3 11 11 C 1.34783 * 120.00013 * 179.97438 * 2 1 3 12 12 O 1.21286 * 120.00030 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99719 * 0.02562 * 11 2 1 14 14 H 1.09002 * 109.46709 * 40.01698 * 13 11 2 15 15 C 1.53041 * 109.45414 * 280.04810 * 13 11 2 16 16 C 1.53124 * 109.27693 * 180.81359 * 15 13 11 17 17 C 1.53119 * 109.16307 * 57.65275 * 16 15 13 18 18 C 1.53036 * 109.27592 * 302.34424 * 17 16 15 19 19 N 1.46845 * 109.46357 * 160.00298 * 13 11 2 20 20 H 1.08998 * 109.46946 * 267.92182 * 1 2 3 21 21 H 1.08992 * 109.47321 * 27.92120 * 1 2 3 22 22 H 1.08998 * 109.47452 * 147.92547 * 1 2 3 23 23 H 0.97001 * 120.00465 * 179.97438 * 6 5 3 24 24 H 1.09000 * 109.50569 * 300.75165 * 15 13 11 25 25 H 1.08995 * 109.50770 * 60.83447 * 15 13 11 26 26 H 1.09002 * 109.52039 * 297.74525 * 16 15 13 27 27 H 1.09001 * 109.52089 * 177.55639 * 16 15 13 28 28 H 1.09004 * 109.50317 * 182.40031 * 17 16 15 29 29 H 1.09002 * 109.49993 * 62.28852 * 17 16 15 30 30 H 1.09005 * 109.45717 * 179.19544 * 18 17 16 31 31 H 1.08996 * 109.46311 * 299.16217 * 18 17 16 32 32 H 1.00903 * 111.00321 * 57.64397 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1737 1.2200 -0.3440 5 6 1.5288 2.3485 0.4425 6 7 0.4180 2.2739 1.1406 7 14 2.2721 4.0154 0.0450 8 1 1.7221 4.5081 -1.2434 9 1 1.9376 4.9770 1.1261 10 1 3.7474 3.8864 -0.0636 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.5224 -2.3935 -0.6607 15 6 0.9119 -2.7875 1.4213 16 6 0.1645 -4.1239 1.4203 17 6 1.0898 -5.2168 0.8781 18 6 1.5580 -4.8312 -0.5270 19 7 2.2676 -3.5467 -0.4724 20 1 -0.3633 -0.0373 1.0270 21 1 -0.3633 0.9080 -0.4812 22 1 -0.3634 -0.8708 -0.5457 23 1 -0.0159 3.0845 1.4499 24 1 1.7734 -2.8529 2.0859 25 1 0.2452 -1.9973 1.7665 26 1 -0.7188 -4.0468 0.7863 27 1 -0.1368 -4.3735 2.4376 28 1 0.5496 -6.1626 0.8349 29 1 1.9540 -5.3204 1.5341 30 1 2.2284 -5.6005 -0.9102 31 1 0.6943 -4.7413 -1.1857 32 1 3.0947 -3.6145 0.1017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160585128.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:28 Heat of formation + Delta-G solvation = -56.826406 kcal Electronic energy + Delta-G solvation = -14761.322136 eV Core-core repulsion = 12334.711938 eV Total energy + Delta-G solvation = -2426.610198 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95844 -38.73556 -36.63083 -33.75732 -32.63998 -31.89568 -28.26285 -26.77180 -24.72607 -24.06126 -21.41515 -20.67082 -18.90379 -18.02817 -16.93572 -16.33096 -16.05139 -15.60666 -15.46339 -15.24380 -14.72093 -14.15813 -13.95276 -13.37414 -13.29193 -13.13867 -12.94826 -12.64636 -12.51750 -12.25830 -12.15448 -12.07060 -11.71678 -11.44141 -11.00922 -10.27157 -9.68996 -9.20753 -8.35290 -5.97398 1.36767 1.40397 1.52749 2.02456 2.26880 2.93650 3.06754 3.50042 3.83552 3.89677 4.02344 4.18860 4.25954 4.32608 4.52656 4.66204 4.79246 4.89712 4.94681 5.04662 5.10775 5.11751 5.17564 5.35739 5.38682 5.44628 5.97502 6.19072 6.43810 6.50617 7.17351 7.47418 8.05036 8.67696 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.060213 B = 0.008356 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.902576 B = 3350.169322 C = 3623.891313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.462 5.462 3 C -0.348 4.348 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.894 5.894 7 Si 0.989 3.011 8 H -0.264 1.264 9 H -0.272 1.272 10 H -0.277 1.277 11 C 0.442 3.558 12 O -0.629 6.629 13 C 0.093 3.907 14 H 0.102 0.898 15 C -0.139 4.139 16 C -0.110 4.110 17 C -0.153 4.153 18 C 0.057 3.943 19 N -0.685 5.685 20 H 0.046 0.954 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.274 0.726 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -10.795 -0.343 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.180 5.180 3 C -0.476 4.476 4 H 0.087 0.913 5 C -0.203 4.203 6 N -0.532 5.532 7 Si 0.812 3.188 8 H -0.190 1.190 9 H -0.197 1.197 10 H -0.202 1.202 11 C 0.231 3.769 12 O -0.516 6.516 13 C -0.020 4.020 14 H 0.120 0.880 15 C -0.179 4.179 16 C -0.147 4.147 17 C -0.192 4.192 18 C -0.072 4.072 19 N -0.315 5.315 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.173 -10.496 -0.936 11.739 hybrid contribution 0.407 0.976 0.999 1.454 sum -4.766 -9.521 0.062 10.647 Atomic orbital electron populations 1.21464 0.79462 1.00399 1.00757 1.43815 1.06681 1.04592 1.62955 1.19608 0.98906 0.85715 1.43412 0.91349 1.26051 0.97055 1.02760 0.94417 1.70075 1.19680 1.30434 1.33033 0.85010 0.78271 0.76998 0.78511 1.18951 1.19682 1.20243 1.20971 0.87921 0.86152 0.81820 1.90440 1.16205 1.87892 1.57104 1.21254 0.95239 0.88922 0.96627 0.87980 1.22078 1.00451 0.99804 0.95599 1.21552 0.98310 0.92442 1.02403 1.22249 0.99887 0.99461 0.97589 1.22192 0.99043 0.89553 0.96426 1.60384 1.08423 1.04929 1.57774 0.93507 0.92578 0.91749 0.91629 0.93665 0.91768 0.90421 0.90508 0.88784 0.92575 0.89173 0.90226 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.50 7.85 127.77 1.00 6.51 16 2 N -0.46 -24.75 3.02 -658.91 -1.99 -26.74 16 3 C -0.35 -20.56 9.28 84.04 0.78 -19.78 16 4 H 0.07 4.35 7.41 -2.91 -0.02 4.32 16 5 C 0.00 -0.05 5.00 84.93 0.42 0.38 16 6 N -0.89 -47.97 10.83 21.66 0.23 -47.74 16 7 Si 0.99 43.32 29.58 68.60 2.03 45.35 16 8 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 C 0.44 22.75 6.88 87.66 0.60 23.35 16 12 O -0.63 -37.50 15.88 -3.05 -0.05 -37.55 16 13 C 0.09 3.52 2.10 44.19 0.09 3.61 16 14 H 0.10 3.56 6.33 -2.39 -0.02 3.55 16 15 C -0.14 -4.59 5.27 30.65 0.16 -4.43 16 16 C -0.11 -2.53 6.00 30.68 0.18 -2.35 16 17 C -0.15 -3.13 6.08 30.65 0.19 -2.95 16 18 C 0.06 1.35 6.55 86.33 0.57 1.91 16 19 N -0.68 -23.68 6.28 -495.56 -3.11 -26.79 16 20 H 0.05 2.14 7.18 -2.39 -0.02 2.12 16 21 H 0.06 2.67 6.83 -2.39 -0.02 2.65 16 22 H 0.06 2.36 6.03 -2.39 -0.01 2.34 16 23 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 2.24 6.87 -2.39 -0.02 2.23 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.34 12.64 8.31 -89.69 -0.75 11.89 16 Total: -1.00 -68.36 256.18 1.48 -66.87 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.37 Total: 20.34 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 4.00 Total: 6.27 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -4.87 Total: -101.27 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.05 Total: -37.55 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -68.36 1.48 -66.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160585128.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.046 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds