Wall clock time and date at job start Sun Mar 29 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46889 * 2 1 4 4 O 1.42898 * 109.47444 * 119.99886 * 2 1 3 5 5 C 1.42906 * 113.99821 * 270.00482 * 4 2 1 6 6 C 1.53006 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47325 * 59.99531 * 11 9 7 13 13 H 1.48496 * 109.47425 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47183 * 299.99726 * 11 9 7 15 15 C 1.52991 * 109.47182 * 240.00166 * 2 1 3 16 16 C 1.54265 * 110.03295 * 297.90353 * 15 2 1 17 17 C 1.54968 * 104.16300 * 217.13533 * 16 15 2 18 18 C 1.54885 * 102.77379 * 37.88867 * 17 16 15 19 19 C 1.53879 * 110.03260 * 180.68785 * 15 2 1 20 20 H 1.08995 * 109.47513 * 60.00019 * 1 2 3 21 21 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47118 * 299.99550 * 1 2 3 23 23 H 1.09000 * 109.47490 * 59.99859 * 5 4 2 24 24 H 1.09001 * 109.47232 * 299.99213 * 5 4 2 25 25 H 1.08993 * 109.46955 * 299.99993 * 6 5 4 26 26 H 1.09000 * 109.47050 * 59.99822 * 6 5 4 27 27 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 28 28 H 1.09000 * 110.01905 * 59.29873 * 15 2 1 29 29 H 1.08999 * 110.48805 * 335.78955 * 16 15 2 30 30 H 1.09002 * 110.48845 * 98.42544 * 16 15 2 31 31 H 1.08991 * 110.71982 * 279.57276 * 17 16 15 32 32 H 1.09002 * 110.91820 * 156.29132 * 17 16 15 33 33 H 1.08997 * 110.48850 * 203.40550 * 18 17 16 34 34 H 1.09007 * 110.60174 * 80.82022 * 18 17 16 35 35 H 1.08996 * 110.03118 * 238.56826 * 19 15 2 36 36 H 1.08992 * 110.03091 * 359.97438 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 0.1831 2.2941 6 6 2.7080 -0.6407 3.4792 7 6 2.9128 0.2627 4.6678 8 1 2.7022 1.3189 4.5860 9 6 3.3700 -0.2587 5.8595 10 7 3.6269 -1.5448 5.9589 11 14 3.6233 0.8609 7.3330 12 1 2.3341 1.5035 7.6938 13 1 4.1163 0.0615 8.4832 14 1 4.6203 1.9079 6.9937 15 6 2.0400 -0.7212 -1.2492 16 6 1.5767 -2.1925 -1.2361 17 6 2.7748 -2.9727 -1.8340 18 6 3.9975 -2.2284 -1.2424 19 6 3.5786 -0.7437 -1.2536 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.2537 0.6547 2.5589 24 1 2.9320 0.9515 2.0450 25 1 1.9759 -1.4088 3.7281 26 1 3.6542 -1.1127 3.2147 27 1 3.9482 -1.9117 6.7973 28 1 1.6714 -0.2216 -2.1451 29 1 1.3786 -2.5211 -0.2159 30 1 0.6900 -2.3189 -1.8574 31 1 2.7726 -2.9082 -2.9220 32 1 2.7622 -4.0134 -1.5100 33 1 4.8767 -2.3814 -1.8683 34 1 4.1933 -2.5619 -0.2233 35 1 3.9566 -0.2559 -2.1520 36 1 3.9619 -0.2405 -0.3660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205647911.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:09 Heat of formation + Delta-G solvation = -101.526905 kcal Electronic energy + Delta-G solvation = -14507.812384 eV Core-core repulsion = 12182.804171 eV Total energy + Delta-G solvation = -2325.008214 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16089 -37.78519 -35.38538 -33.15929 -31.34210 -29.59951 -28.41473 -26.67206 -23.40654 -22.88578 -21.37822 -20.40533 -18.61374 -17.23391 -16.91586 -16.58006 -16.09631 -16.03775 -14.90197 -14.35307 -14.24257 -14.12345 -13.98597 -13.27503 -13.08610 -12.87633 -12.66751 -12.38047 -12.35114 -11.93369 -11.81698 -11.70305 -11.59017 -11.44798 -11.35702 -11.23417 -11.14251 -10.63423 -10.25524 -8.24463 -6.38070 1.39536 1.43870 1.51946 2.37111 2.97308 3.09005 3.69161 3.80816 3.90795 4.24503 4.29783 4.38705 4.46887 4.47350 4.65468 4.72093 4.77042 4.84608 4.89392 4.91189 4.96274 5.05183 5.11919 5.12345 5.26666 5.33409 5.36660 5.43014 5.55307 5.58493 5.61937 5.74370 6.12226 6.56049 6.78033 7.31840 8.88437 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.043275 B = 0.006421 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.865115 B = 4359.896638 C = 4660.304846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 H 0.056 0.944 4 O -0.397 6.397 5 C 0.088 3.912 6 C 0.032 3.968 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.975 3.025 12 H -0.264 1.264 13 H -0.281 1.281 14 H -0.264 1.264 15 C -0.084 4.084 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.125 4.125 19 C -0.118 4.118 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.038 0.962 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.266 0.734 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 2.384 -16.032 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.019 3.981 3 H 0.074 0.926 4 O -0.317 6.317 5 C 0.012 3.988 6 C -0.005 4.005 7 C -0.586 4.586 8 H 0.084 0.916 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.798 3.202 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.189 1.189 15 C -0.103 4.103 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.163 4.163 19 C -0.155 4.155 20 H 0.107 0.893 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.484 2.059 -15.913 16.420 hybrid contribution 0.226 0.422 1.219 1.309 sum -3.258 2.481 -14.694 15.254 Atomic orbital electron populations 1.22256 0.95259 1.02623 1.02430 1.22334 0.94220 0.95518 0.86034 0.92561 1.87933 1.86717 1.36462 1.20586 1.22411 0.97931 0.92630 0.85838 1.18879 0.94602 0.95180 0.91836 1.21459 1.45261 0.95205 0.96658 0.91591 1.26055 0.94625 0.96738 1.02364 1.70125 1.45750 1.13875 1.27437 0.85363 0.79128 0.78335 0.77390 1.18867 1.20641 1.18876 1.21965 0.95458 0.96777 0.96071 1.22353 0.98353 0.94180 1.00459 1.22478 0.93988 0.98504 1.00603 1.22310 0.98674 0.95418 0.99884 1.22122 0.95293 0.96963 1.01167 0.89305 0.92242 0.93719 0.94233 0.94338 0.99052 0.99083 0.92534 0.87573 0.93487 0.90223 0.89643 0.92100 0.90710 0.94472 0.90154 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 9.32 71.98 0.67 -3.70 16 2 C 0.08 2.31 2.25 30.59 0.07 2.38 16 3 H 0.06 1.64 7.79 -2.39 -0.02 1.62 16 4 O -0.40 -16.33 8.44 -148.98 -1.26 -17.58 16 5 C 0.09 4.01 5.69 71.98 0.41 4.42 16 6 C 0.03 1.84 5.34 29.85 0.16 2.00 16 7 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.00 0.02 5.46 84.65 0.46 0.48 16 10 N -0.93 -58.41 13.29 21.45 0.28 -58.12 16 11 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 15 C -0.08 -2.10 2.83 -10.07 -0.03 -2.13 16 16 C -0.12 -2.92 5.21 31.70 0.17 -2.76 16 17 C -0.12 -2.71 6.91 31.91 0.22 -2.49 16 18 C -0.13 -3.35 6.83 31.67 0.22 -3.13 16 19 C -0.12 -3.12 6.22 31.32 0.19 -2.92 16 20 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 1.58 7.22 -2.39 -0.02 1.56 16 22 H 0.04 1.25 7.87 -2.39 -0.02 1.23 16 23 H 0.04 1.72 7.87 -2.39 -0.02 1.70 16 24 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.51 7.03 -2.39 -0.02 1.49 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 1.30 7.40 -2.39 -0.02 1.28 16 Total: -1.00 -66.68 288.48 4.83 -61.85 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.01 Total: 7.02 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 2.77 Total: -39.84 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.28 Total: -58.12 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.26 Total: -17.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -66.68 4.83 -61.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205647911.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.677 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds