Wall clock time and date at job start Sun Mar 29 2020 22:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48496 * 109.46950 * 240.00238 * 3 2 1 5 5 H 1.48499 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47372 * 120.00008 * 3 2 1 7 7 C 1.37876 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46844 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47313 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47479 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46960 * 180.02562 * 12 11 10 14 14 O 1.42899 * 109.46892 * 179.97438 * 13 12 11 15 15 C 1.42902 * 113.99903 * 180.02562 * 14 13 12 16 16 C 1.53786 * 113.61284 * 209.99760 * 15 14 13 17 17 C 1.53781 * 87.17350 * 220.06071 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 0.97006 * 120.00552 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47234 * 59.99991 * 9 7 2 21 21 H 1.08997 * 109.47002 * 299.99587 * 9 7 2 22 22 H 1.09006 * 109.47208 * 60.00459 * 10 9 7 23 23 H 1.08997 * 109.47485 * 299.99904 * 10 9 7 24 24 H 1.09001 * 109.46716 * 59.99880 * 11 10 9 25 25 H 1.08997 * 109.46979 * 300.00473 * 11 10 9 26 26 H 1.09002 * 109.47038 * 59.99851 * 12 11 10 27 27 H 1.08997 * 109.47111 * 300.00036 * 12 11 10 28 28 H 1.08998 * 109.46970 * 60.00592 * 13 12 11 29 29 H 1.08997 * 109.47169 * 299.99916 * 13 12 11 30 30 H 1.08993 * 112.90736 * 341.24804 * 15 14 13 31 31 H 1.09002 * 113.61357 * 105.46987 * 16 15 14 32 32 H 1.09002 * 113.61608 * 334.65149 * 16 15 14 33 33 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 34 34 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 35 35 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 36 36 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 6 1.7095 -7.4750 0.0018 14 8 2.6381 -8.5611 0.0018 15 6 2.0235 -9.8513 0.0012 16 6 2.8601 -10.9324 0.7057 17 6 2.4340 -11.8884 -0.4210 18 6 2.2464 -10.6414 -1.3012 19 1 -0.4851 0.8400 0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8719 -3.6043 0.8906 23 1 2.8719 -3.6043 -0.8894 24 1 0.8533 -5.0451 -0.8886 25 1 0.8539 -5.0446 0.8913 26 1 3.1011 -6.0918 0.8918 27 1 3.1012 -6.0927 -0.8881 28 1 1.0832 -7.5330 -0.8884 29 1 1.0825 -7.5326 0.8916 30 1 0.9827 -9.8255 0.3236 31 1 2.4745 -11.2133 1.6858 32 1 3.9290 -10.7193 0.7166 33 1 3.2336 -12.5465 -0.7610 34 1 1.5055 -12.4205 -0.2142 35 1 3.1473 -10.3476 -1.8398 36 1 1.3661 -10.6879 -1.9423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224368233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:31 Heat of formation + Delta-G solvation = -62.956708 kcal Electronic energy + Delta-G solvation = -13445.090470 eV Core-core repulsion = 11121.754786 eV Total energy + Delta-G solvation = -2323.335684 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.36227 -36.60124 -34.89999 -32.73940 -30.24240 -26.56889 -25.84789 -24.73499 -23.26278 -21.07127 -20.02712 -19.70443 -17.12003 -16.14367 -15.89794 -15.62705 -14.65181 -14.42662 -14.30427 -13.05968 -12.77814 -12.64638 -12.58162 -11.93792 -11.81685 -11.67947 -11.34950 -10.99329 -10.96125 -10.79853 -10.61031 -10.43224 -10.36875 -10.33722 -9.59903 -9.42224 -9.21874 -8.98190 -8.30303 -5.95673 -3.97789 3.36151 3.40008 3.42930 3.67978 4.37798 4.42803 4.49661 4.64911 4.67020 5.10196 5.19150 5.31103 5.39781 5.45769 5.54640 5.55990 5.62654 5.70406 5.74338 5.78560 5.95082 6.07128 6.15304 6.32934 6.45771 6.56198 6.85905 6.99497 7.21766 7.29489 7.73134 7.89250 8.05430 8.48715 9.09578 9.65941 11.15737 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.111138 B = 0.003613 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 251.877511 B = 7747.729404 C = 7842.404440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.061 3.939 14 O -0.376 6.376 15 C 0.061 3.939 16 C -0.139 4.139 17 C -0.142 4.142 18 C -0.158 4.158 19 H 0.260 0.740 20 H 0.014 0.986 21 H 0.015 0.985 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -20.811 -0.269 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.016 4.016 14 O -0.295 6.295 15 C 0.002 3.998 16 C -0.176 4.176 17 C -0.180 4.180 18 C -0.196 4.196 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.033 0.967 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.024 -20.656 -0.269 20.878 hybrid contribution 0.084 0.933 -0.017 0.937 sum 3.108 -19.723 -0.286 19.969 Atomic orbital electron populations 1.69958 1.06061 1.26626 1.51051 1.25035 0.94853 0.99239 0.95421 0.86660 0.79580 0.83159 0.78613 1.20258 1.21313 1.20250 1.21270 0.93032 0.91230 1.50344 0.92771 1.19107 0.94071 0.91444 0.97088 1.21616 0.99051 0.93774 1.00294 1.21589 0.97745 0.94473 1.01548 1.21599 0.99033 0.91909 1.02906 1.22684 0.92123 0.86935 0.99827 1.87948 1.33691 1.13391 1.94517 1.23720 0.96816 0.82777 0.96444 1.23212 1.01453 0.94878 0.98071 1.22654 1.01767 0.96261 0.97308 1.23511 1.02735 0.95989 0.97323 0.93006 0.96713 0.96701 0.93420 0.93415 0.92446 0.92453 0.91500 0.91511 0.93497 0.93484 0.89754 0.91187 0.89208 0.90879 0.90112 0.89280 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.47 16 11 C -0.12 -2.01 5.21 -26.73 -0.14 -2.15 16 12 C -0.12 -1.75 5.58 -26.73 -0.15 -1.90 16 13 C 0.06 0.80 5.78 37.16 0.21 1.02 16 14 O -0.38 -5.11 10.36 -35.23 -0.36 -5.48 16 15 C 0.06 0.64 4.32 -25.82 -0.11 0.53 16 16 C -0.14 -1.24 7.91 -25.92 -0.20 -1.44 16 17 C -0.14 -1.08 8.08 -25.92 -0.21 -1.29 16 18 C -0.16 -1.45 7.92 -25.82 -0.20 -1.65 16 19 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 20 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 298.19 15.07 4.49 4.49 Total: -1.00 -30.81 298.19 -8.36 -39.17 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -6.71 Total: -5.47 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.49 Total: -22.95 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.82 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.36 Total: -5.48 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.81 -8.36 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224368233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.790 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds