Wall clock time and date at job start Sun Mar 29 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47190 * 2 1 4 4 C 1.53003 * 109.46824 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47126 * 304.99843 * 4 3 2 6 6 C 1.52995 * 109.47067 * 65.00388 * 4 3 2 7 7 C 1.53003 * 109.47067 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47215 * 299.99881 * 7 6 4 9 9 C 1.52999 * 109.47085 * 59.99415 * 8 7 6 10 10 C 1.52998 * 109.46903 * 185.00387 * 4 3 2 11 11 H 1.08992 * 109.47636 * 59.99689 * 10 4 3 12 12 O 1.42901 * 109.46826 * 299.99794 * 10 4 3 13 13 C 1.34934 * 116.99894 * 150.00301 * 12 10 4 14 14 H 1.07999 * 119.99963 * 0.02562 * 13 12 10 15 15 C 1.38637 * 119.99727 * 179.97438 * 13 12 10 16 16 N 1.31581 * 120.00374 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99524 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47488 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46997 * 120.00520 * 17 15 13 20 20 H 1.48505 * 109.47163 * 239.99771 * 17 15 13 21 21 H 1.09001 * 109.47066 * 299.99859 * 1 2 3 22 22 H 1.08998 * 109.46975 * 59.99456 * 1 2 3 23 23 H 1.08995 * 109.47192 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 240.00141 * 2 1 3 25 25 H 1.08998 * 109.46975 * 120.00544 * 2 1 3 26 26 H 1.09001 * 109.47001 * 60.00101 * 3 2 1 27 27 H 1.08994 * 109.47192 * 299.99891 * 3 2 1 28 28 H 1.08997 * 109.47273 * 299.99448 * 6 4 3 29 29 H 1.08994 * 109.47383 * 59.99875 * 6 4 3 30 30 H 1.09003 * 109.47126 * 59.99455 * 7 6 4 31 31 H 1.09004 * 109.47369 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47465 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.46467 * 300.00305 * 8 7 6 34 34 H 1.09002 * 109.46998 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.47009 * 60.00578 * 9 8 7 36 36 H 0.96996 * 119.99866 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0794 0.8330 -1.3083 7 6 5.6095 0.8323 -1.3087 8 6 6.1202 2.2691 -1.1826 9 6 5.6107 2.8785 0.1250 10 6 4.0801 2.8793 0.1252 11 1 3.7172 3.3135 1.0567 12 8 3.6034 3.6523 -0.9781 13 6 3.3993 4.9684 -0.7614 14 1 3.5962 5.3921 0.2123 15 6 2.9379 5.7767 -1.7888 16 7 2.6985 5.2605 -2.9752 17 14 2.6548 7.5985 -1.4884 18 1 2.9958 7.9271 -0.0811 19 1 3.5151 8.3907 -2.4036 20 1 1.2288 7.9263 -1.7423 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 3.7161 -0.1907 -1.3979 29 1 3.7158 1.4226 -2.1498 30 1 5.9728 0.2425 -0.4671 31 1 5.9724 0.3978 -2.2401 32 1 7.2101 2.2687 -1.1833 33 1 5.7568 2.8589 -2.0241 34 1 5.9741 3.9022 0.2146 35 1 5.9739 2.2887 0.9666 36 1 2.3754 5.8261 -3.6939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224382119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:51 Heat of formation + Delta-G solvation = -75.835978 kcal Electronic energy + Delta-G solvation = -15054.473832 eV Core-core repulsion = 12730.579660 eV Total energy + Delta-G solvation = -2323.894172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.62533 -35.13740 -34.18119 -31.55060 -30.24220 -29.08969 -25.43997 -24.29959 -22.23057 -21.22971 -19.92936 -18.82429 -17.27356 -15.09887 -14.82146 -14.74994 -13.92914 -13.89102 -13.65561 -12.89723 -12.70665 -12.31420 -12.18032 -11.72446 -11.51162 -11.15116 -11.08472 -10.93908 -10.71070 -10.57112 -10.39448 -10.20221 -10.05677 -9.95626 -9.88686 -9.27514 -9.05707 -8.80829 -7.85728 -5.87800 -3.48559 3.33457 3.37630 3.41147 4.37221 5.20572 5.29488 5.38533 5.45408 5.50868 5.58876 5.67753 5.87266 5.90363 5.97980 6.09522 6.14130 6.19224 6.24816 6.25699 6.32023 6.40463 6.46535 6.56519 6.61903 6.63412 6.77975 6.91649 6.99428 7.05044 7.11198 7.19921 7.37773 7.55140 8.50975 9.56827 10.29012 11.33283 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.024763 B = 0.010792 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.447072 B = 2593.994036 C = 3304.467650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.076 4.076 5 H 0.059 0.941 6 C -0.108 4.108 7 C -0.112 4.112 8 C -0.111 4.111 9 C -0.135 4.135 10 C 0.100 3.900 11 H 0.034 0.966 12 O -0.275 6.275 13 C -0.352 4.352 14 H 0.059 0.941 15 C 0.022 3.978 16 N -0.889 5.889 17 Si 0.917 3.083 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -8.655 5.336 10.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.094 4.094 5 H 0.077 0.923 6 C -0.146 4.146 7 C -0.150 4.150 8 C -0.148 4.148 9 C -0.173 4.173 10 C 0.041 3.959 11 H 0.052 0.948 12 O -0.190 6.190 13 C -0.431 4.431 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.533 5.533 17 Si 0.745 3.255 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.211 1.211 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.260 -8.685 5.006 10.103 hybrid contribution -0.026 1.122 0.438 1.205 sum 1.233 -7.563 5.445 9.400 Atomic orbital electron populations 1.21767 0.96553 1.00601 1.01905 1.21594 0.95279 0.98071 1.01180 1.21536 0.94966 0.95146 1.03027 1.21165 0.95262 0.95690 0.97288 0.92279 1.21508 0.94665 0.99344 0.99063 1.21476 0.96492 0.96973 1.00045 1.21361 0.97970 0.95910 0.99566 1.22021 0.98419 1.00199 0.96707 1.21746 0.91516 0.91277 0.91372 0.94845 1.85683 1.83348 1.18991 1.30988 1.20897 1.42487 0.83117 0.96622 0.92371 1.24857 0.99268 0.98257 0.95181 1.70015 1.47306 1.34483 1.01466 0.86008 0.77824 0.83877 0.77781 1.20099 1.21085 1.21065 0.93101 0.92589 0.93566 0.92096 0.93015 0.92913 0.90239 0.93328 0.90275 0.93407 0.93022 0.93873 0.90332 0.92304 0.93559 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.82 5.69 -26.73 -0.15 -1.97 16 3 C -0.11 -1.99 4.47 -26.73 -0.12 -2.11 16 4 C -0.08 -1.39 2.02 -90.62 -0.18 -1.57 16 5 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 6 C -0.11 -1.95 4.81 -26.73 -0.13 -2.08 16 7 C -0.11 -1.87 5.92 -26.73 -0.16 -2.02 16 8 C -0.11 -2.08 5.78 -26.73 -0.15 -2.23 16 9 C -0.14 -2.64 5.63 -26.70 -0.15 -2.79 16 10 C 0.10 2.18 2.39 -26.71 -0.06 2.12 16 11 H 0.03 0.74 7.80 -51.93 -0.41 0.33 16 12 O -0.28 -7.49 7.50 -16.52 -0.12 -7.61 16 13 C -0.35 -10.13 9.78 30.88 0.30 -9.83 16 14 H 0.06 1.62 7.64 -52.49 -0.40 1.22 16 15 C 0.02 0.64 5.49 -17.51 -0.10 0.54 16 16 N -0.89 -27.53 13.68 55.48 0.76 -26.77 16 17 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.72 7.83 -51.93 -0.41 1.32 16 28 H 0.05 0.76 6.56 -51.93 -0.34 0.42 16 29 H 0.08 1.70 7.68 -51.93 -0.40 1.31 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.76 7.68 -51.93 -0.40 1.36 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 283.59 15.07 4.27 4.27 Total: -1.00 -30.53 283.59 -7.13 -37.66 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.48 Total: -1.15 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -0.54 Total: -23.61 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.76 Total: -26.77 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.12 Total: -7.61 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.53 -7.13 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.181 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds