Wall clock time and date at job start Sun Mar 29 2020 22:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47501 * 2 1 4 4 H 1.09006 * 109.46841 * 54.57038 * 3 2 1 5 5 C 1.50702 * 109.47467 * 174.56454 * 3 2 1 6 6 H 1.07998 * 119.99499 * 120.00145 * 5 3 2 7 7 C 1.37871 * 120.00200 * 300.00419 * 5 3 2 8 8 N 1.31512 * 119.99943 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00013 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47496 * 89.99742 * 9 7 5 11 11 H 1.48506 * 109.47193 * 210.00003 * 9 7 5 12 12 H 1.48506 * 109.47217 * 329.99629 * 9 7 5 13 13 N 1.46897 * 109.47287 * 294.57445 * 3 2 1 14 14 C 1.46899 * 111.00468 * 152.66844 * 13 3 2 15 15 H 1.08992 * 110.43413 * 35.02459 * 14 13 3 16 16 C 1.54899 * 110.48081 * 272.48929 * 14 13 3 17 17 C 1.54892 * 102.74561 * 203.38003 * 16 14 13 18 18 C 1.54268 * 104.19639 * 37.93890 * 17 16 14 19 19 C 1.54081 * 106.62241 * 336.28123 * 18 17 16 20 20 H 1.09000 * 110.16029 * 240.87748 * 19 18 17 21 21 N 1.46901 * 110.00550 * 119.38380 * 19 18 17 22 22 H 1.08998 * 109.47325 * 303.56219 * 1 2 3 23 23 H 1.09003 * 109.46798 * 63.56041 * 1 2 3 24 24 H 1.08994 * 109.47165 * 183.55785 * 1 2 3 25 25 H 1.09004 * 109.47111 * 239.99686 * 2 1 3 26 26 H 1.09002 * 109.46744 * 120.00272 * 2 1 3 27 27 H 0.97002 * 120.00023 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00136 * 28.70180 * 13 3 2 29 29 H 1.09000 * 110.75425 * 321.69037 * 16 14 13 30 30 H 1.08995 * 110.75558 * 85.06116 * 16 14 13 31 31 H 1.08995 * 110.48451 * 156.62403 * 17 16 14 32 32 H 1.09000 * 110.48045 * 279.13112 * 17 16 14 33 33 H 1.09003 * 110.02716 * 95.67803 * 18 17 16 34 34 H 1.09002 * 110.02864 * 217.05563 * 18 17 16 35 35 H 1.00902 * 111.00137 * 62.97476 * 21 19 18 36 36 H 1.00901 * 111.00239 * 186.92878 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5995 1.9836 0.8374 5 6 3.5411 1.4445 0.1346 6 1 4.1518 1.8872 -0.6383 7 6 4.1345 0.8814 1.2443 8 7 5.4444 0.8828 1.3615 9 14 3.0781 0.1151 2.5808 10 1 2.8594 -1.3217 2.2761 11 1 3.7660 0.2443 3.8905 12 1 1.7689 0.8137 2.6384 13 7 1.6603 2.0961 -1.2595 14 6 1.5265 3.5479 -1.0798 15 1 2.2604 3.9116 -0.3607 16 6 0.0920 3.9070 -0.6188 17 6 -0.0497 5.3843 -1.0624 18 6 0.6810 5.4436 -2.4197 19 6 1.6867 4.2762 -2.4302 20 1 2.7031 4.6569 -2.5308 21 7 1.3805 3.3590 -3.5360 22 1 -0.3634 0.5681 0.8563 23 1 -0.3633 0.4576 -0.9202 24 1 -0.3633 -1.0256 0.0638 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 5.8620 0.4863 2.1421 28 1 0.8113 1.6980 -1.6319 29 1 -0.6439 3.2802 -1.1225 30 1 0.0005 3.8182 0.4636 31 1 -1.1006 5.6472 -1.1830 32 1 0.4279 6.0468 -0.3405 33 1 -0.0344 5.3294 -3.2341 34 1 1.2100 6.3916 -2.5178 35 1 1.4809 3.8211 -4.4274 36 1 1.9571 2.5323 -3.4904 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:48 Heat of formation + Delta-G solvation = -5.879756 kcal Electronic energy + Delta-G solvation = -15083.347053 eV Core-core repulsion = 12794.779162 eV Total energy + Delta-G solvation = -2288.567891 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.56135 -35.68558 -32.10209 -32.04414 -31.06913 -27.60566 -26.34381 -25.19142 -22.46284 -20.43942 -19.83202 -18.92420 -16.64730 -15.90720 -15.42358 -14.93335 -14.45664 -13.96372 -13.58365 -13.40910 -12.81726 -12.51671 -12.11848 -11.91805 -11.54092 -11.31635 -11.02577 -10.85236 -10.80508 -10.69030 -10.38503 -10.26618 -10.05044 -9.86810 -9.35668 -9.15963 -8.50082 -8.20518 -7.22377 -6.01859 -3.98183 3.27448 3.38216 3.39894 4.42955 4.86135 4.92261 4.99832 5.25003 5.36835 5.45851 5.78236 5.80057 5.85850 5.88958 5.95305 5.97212 6.02004 6.15239 6.25260 6.31132 6.37709 6.52268 6.57148 6.66654 6.71713 6.78169 6.89631 7.23763 7.62913 7.77255 7.99515 8.12367 8.39137 8.83473 9.10081 9.62064 11.11692 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034207 B = 0.009927 C = 0.009257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.355852 B = 2820.033450 C = 3024.127071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.189 3.811 4 H 0.001 0.999 5 C -0.493 4.493 6 H 0.079 0.921 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.883 3.117 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.665 5.665 14 C 0.098 3.902 15 H 0.086 0.914 16 C -0.149 4.149 17 C -0.118 4.118 18 C -0.119 4.119 19 C 0.095 3.905 20 H 0.033 0.967 21 N -0.839 5.839 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.262 0.738 28 H 0.328 0.672 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.324 0.676 36 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 5.267 -5.231 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.080 3.920 4 H 0.018 0.982 5 C -0.532 4.532 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.542 5.542 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.193 1.193 13 N -0.295 5.295 14 C -0.013 4.013 15 H 0.104 0.896 16 C -0.188 4.188 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.017 4.017 20 H 0.051 0.949 21 N -0.372 5.372 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.503 5.179 -5.017 12.740 hybrid contribution -0.266 -0.299 1.080 1.152 sum -10.769 4.880 -3.937 12.461 Atomic orbital electron populations 1.21908 0.98175 1.00418 1.00854 1.22119 0.92985 1.00575 1.01649 1.19626 0.96553 0.89156 0.86616 0.98166 1.21063 0.89271 1.37119 1.05747 0.90341 1.24967 0.94741 0.96067 0.97805 1.69890 1.08817 1.46032 1.29464 0.86935 0.80718 0.79773 0.81220 1.20667 1.22622 1.19318 1.60286 1.38025 1.01339 1.29877 1.22373 0.94520 0.89790 0.94639 0.89561 1.23187 0.99229 0.96141 1.00256 1.22195 0.99530 0.97131 0.96778 1.22274 0.98212 0.97292 0.97921 1.21934 0.95504 0.91912 0.92382 0.94899 1.58766 1.64059 1.10460 1.03869 0.93689 0.92967 0.93746 0.91429 0.92995 0.92815 0.85236 0.91604 0.92347 0.92398 0.92036 0.91311 0.92622 0.86472 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.69 37.16 0.36 -2.36 16 2 C -0.14 -2.91 5.00 -26.73 -0.13 -3.04 16 3 C 0.19 4.39 1.47 -68.87 -0.10 4.29 16 4 H 0.00 0.02 6.81 -51.93 -0.35 -0.33 16 5 C -0.49 -13.84 9.23 -34.44 -0.32 -14.16 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 7 C 0.06 1.88 5.45 -17.82 -0.10 1.78 16 8 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 9 Si 0.88 22.10 24.41 -169.99 -4.15 17.95 16 10 H -0.28 -6.83 6.83 56.52 0.39 -6.45 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 13 N -0.66 -13.18 4.63 -99.22 -0.46 -13.64 16 14 C 0.10 1.79 2.86 -66.05 -0.19 1.60 16 15 H 0.09 1.80 7.79 -51.93 -0.40 1.40 16 16 C -0.15 -2.34 6.37 -24.73 -0.16 -2.50 16 17 C -0.12 -1.57 6.83 -25.07 -0.17 -1.75 16 18 C -0.12 -1.57 6.59 -25.50 -0.17 -1.73 16 19 C 0.10 1.49 4.02 -66.49 -0.27 1.22 16 20 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 21 N -0.84 -12.16 8.71 -3.63 -0.03 -12.19 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.83 6.57 -51.93 -0.34 0.48 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.05 1.20 3.21 -51.93 -0.17 1.03 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.33 6.04 5.89 -39.29 -0.23 5.80 16 29 H 0.07 1.03 7.82 -51.93 -0.41 0.62 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.32 3.98 9.07 -39.29 -0.36 3.62 16 36 H 0.36 5.70 7.87 -39.29 -0.31 5.39 16 LS Contribution 274.14 15.07 4.13 4.13 Total: -1.00 -29.20 274.14 -6.95 -36.14 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.97 Total: 11.30 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.24 Total: -16.64 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.28 Total: -52.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.15 Total: 17.95 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.20 -6.95 -36.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.264 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds