Wall clock time and date at job start Sun Mar 29 2020 21:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47109 * 2 1 4 4 H 1.08991 * 109.91115 * 306.10245 * 3 2 1 5 5 N 1.47901 * 109.91859 * 67.41394 * 3 2 1 6 6 C 1.48537 * 105.82321 * 144.68115 * 5 3 2 7 7 C 1.54937 * 103.22666 * 320.79148 * 6 5 3 8 8 C 1.53998 * 109.91638 * 185.00034 * 3 2 1 9 9 H 1.09002 * 110.30791 * 358.34036 * 8 3 2 10 10 N 1.46498 * 110.30714 * 120.40891 * 8 3 2 11 11 C 1.34784 * 120.00190 * 203.61204 * 10 8 3 12 12 O 1.21691 * 119.99307 * 0.02562 * 11 10 8 13 13 C 1.46374 * 120.00177 * 180.02562 * 11 10 8 14 14 H 1.08004 * 120.00005 * 359.97438 * 13 11 10 15 15 C 1.40041 * 119.99823 * 180.02562 * 13 11 10 16 16 N 1.30673 * 120.00127 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00142 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46672 * 59.99998 * 17 15 13 19 19 H 1.48489 * 109.47293 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46918 * 300.00272 * 17 15 13 21 21 H 1.09001 * 109.47163 * 299.99354 * 1 2 3 22 22 H 1.08998 * 109.47307 * 59.99883 * 1 2 3 23 23 H 1.09003 * 109.47405 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46776 * 240.00011 * 2 1 3 25 25 H 1.09003 * 109.47413 * 120.00576 * 2 1 3 26 26 H 1.00903 * 110.99869 * 24.16932 * 5 3 2 27 27 H 1.08993 * 110.66691 * 79.22711 * 6 5 3 28 28 H 1.09000 * 110.66401 * 202.19317 * 6 5 3 29 29 H 1.08995 * 110.72601 * 279.06037 * 7 6 5 30 30 H 1.09000 * 110.72575 * 155.77161 * 7 6 5 31 31 H 0.97000 * 120.00268 * 23.60943 * 10 8 3 32 32 H 0.97008 * 120.00187 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5944 1.9937 -0.8280 5 7 1.7044 2.0955 1.2839 6 6 2.8410 3.0028 1.5860 7 6 4.0778 2.1813 1.1432 8 6 3.5747 1.4562 -0.1262 9 1 3.9608 0.4374 -0.1580 10 7 3.9795 2.1903 -1.3276 11 6 5.1760 1.9438 -1.8969 12 8 5.9199 1.1110 -1.4131 13 6 5.5807 2.6777 -3.0970 14 1 4.9203 3.4165 -3.5266 15 6 6.8237 2.4211 -3.6888 16 7 7.6221 1.5262 -3.1699 17 14 7.3399 3.3571 -5.2208 18 1 7.3777 4.8115 -4.9229 19 1 8.6885 2.9044 -5.6466 20 1 6.3640 3.1001 -6.3102 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.5827 1.4121 2.0162 27 1 2.7630 3.9230 1.0071 28 1 2.8842 3.2233 2.6526 29 1 4.3586 1.4620 1.9124 30 1 4.9133 2.8397 0.9057 31 1 3.3863 2.8538 -1.7135 32 1 8.4833 1.3487 -3.5796 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578235739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:12 Heat of formation + Delta-G solvation = -76.748597 kcal Electronic energy + Delta-G solvation = -14382.699911 eV Core-core repulsion = 11955.225822 eV Total energy + Delta-G solvation = -2427.474089 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61110 -38.60753 -34.86825 -34.26238 -33.86238 -30.08203 -28.91275 -27.70182 -23.82011 -22.90619 -21.69638 -20.92945 -19.13767 -17.46231 -17.03821 -16.89200 -15.95984 -15.85937 -15.01067 -14.72009 -14.26716 -14.13907 -13.99211 -13.49443 -13.22659 -12.94800 -12.78085 -12.63465 -12.25649 -12.20311 -12.07437 -11.89489 -11.77341 -11.57886 -10.93523 -9.87403 -9.69559 -9.40276 -8.30530 -6.87682 1.38503 1.42081 1.53797 2.23359 2.45569 3.04949 3.24660 3.54847 3.88307 3.93739 3.97261 4.19640 4.27044 4.39450 4.55856 4.67927 4.81657 4.89475 4.97173 5.09878 5.15343 5.17988 5.29734 5.30671 5.45979 5.69038 5.86236 6.21554 6.31573 6.47391 6.84987 7.53616 8.48461 8.66189 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046291 B = 0.007397 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.728624 B = 3784.506850 C = 3940.456613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.079 3.921 4 H 0.085 0.915 5 N -0.654 5.654 6 C 0.055 3.945 7 C -0.166 4.166 8 C 0.123 3.877 9 H 0.045 0.955 10 N -0.744 5.744 11 C 0.540 3.460 12 O -0.632 6.632 13 C -0.577 4.577 14 H 0.086 0.914 15 C 0.029 3.971 16 N -0.823 5.823 17 Si 0.998 3.002 18 H -0.254 1.254 19 H -0.274 1.274 20 H -0.254 1.254 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.345 0.655 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.392 0.608 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.913 1.964 5.468 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.031 4.031 4 H 0.103 0.897 5 N -0.283 5.283 6 C -0.074 4.074 7 C -0.206 4.206 8 C 0.016 3.984 9 H 0.064 0.936 10 N -0.398 5.398 11 C 0.344 3.656 12 O -0.519 6.519 13 C -0.613 4.613 14 H 0.104 0.896 15 C -0.186 4.186 16 N -0.452 5.452 17 Si 0.817 3.183 18 H -0.178 1.178 19 H -0.198 1.198 20 H -0.178 1.178 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.162 0.838 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.226 0.774 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.727 1.761 5.580 13.106 hybrid contribution 1.293 -0.247 -0.555 1.429 sum -10.434 1.513 5.025 11.679 Atomic orbital electron populations 1.21654 0.93231 1.01990 1.02597 1.21771 0.98064 0.94297 1.02074 1.22547 0.90568 0.95700 0.94322 0.89683 1.62936 1.40208 1.20973 1.04178 1.23046 0.86414 0.96107 1.01851 1.23436 0.99686 0.99854 0.97663 1.22000 0.95605 0.95026 0.85816 0.93647 1.45852 1.19998 1.44352 1.29560 1.18575 0.79959 0.82460 0.84623 1.90545 1.54523 1.39370 1.67509 1.21429 1.04158 1.24230 1.11502 0.89576 1.26978 0.95435 0.94767 1.01447 1.70187 1.08430 1.28089 1.38537 0.85074 0.77868 0.78864 0.76505 1.17832 1.19846 1.17792 0.91251 0.92949 0.91932 0.92941 0.91295 0.83773 0.90684 0.88358 0.91281 0.93722 0.77414 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.82 71.98 0.71 -2.04 16 2 C -0.12 -3.16 5.07 30.59 0.16 -3.00 16 3 C 0.08 2.31 3.16 45.06 0.14 2.45 16 4 H 0.09 2.56 7.61 -2.39 -0.02 2.54 16 5 N -0.65 -15.94 6.99 -480.22 -3.36 -19.29 16 6 C 0.06 1.44 7.55 86.65 0.65 2.10 16 7 C -0.17 -5.84 6.79 31.80 0.22 -5.63 16 8 C 0.12 4.84 2.95 45.87 0.14 4.98 16 9 H 0.05 2.10 7.14 -2.39 -0.02 2.08 16 10 N -0.74 -34.20 5.07 -442.62 -2.24 -36.44 16 11 C 0.54 31.88 7.75 86.36 0.67 32.55 16 12 O -0.63 -43.09 14.69 -4.32 -0.06 -43.15 16 13 C -0.58 -33.28 9.54 24.83 0.24 -33.04 16 14 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 15 C 0.03 1.63 5.50 85.30 0.47 2.09 16 16 N -0.82 -51.20 11.83 21.83 0.26 -50.94 16 17 Si 1.00 41.44 29.56 68.60 2.03 43.47 16 18 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 21 H 0.07 1.27 7.85 -2.39 -0.02 1.25 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.07 1.64 8.00 -2.39 -0.02 1.62 16 26 H 0.35 7.13 8.31 -89.69 -0.75 6.38 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.87 8.05 -2.39 -0.02 1.85 16 31 H 0.39 15.88 8.29 -92.71 -0.77 15.11 16 32 H 0.27 15.47 8.29 -92.70 -0.77 14.70 16 Total: -1.00 -74.26 267.84 -0.39 -74.65 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.39 Total: 31.24 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 3.38 Total: 0.46 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -5.34 Total: -106.68 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.06 Total: -43.15 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -74.26 -0.39 -74.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578235739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.101 kcal (2) G-P(sol) polarization free energy of solvation -74.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds