Wall clock time and date at job start Sun Mar 29 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48496 * 109.47530 * 89.99986 * 3 2 1 5 5 H 1.48502 * 109.46790 * 210.00192 * 3 2 1 6 6 H 1.48501 * 109.46988 * 329.99521 * 3 2 1 7 7 C 1.40047 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99680 * 12.23610 * 7 2 1 9 9 C 1.46372 * 120.00219 * 192.22680 * 7 2 1 10 10 O 1.21686 * 119.99735 * 9.59899 * 9 7 2 11 11 N 1.34778 * 120.00190 * 189.60240 * 9 7 2 12 12 C 1.46656 * 120.23862 * 359.71675 * 11 9 7 13 13 C 1.52879 * 108.93440 * 69.04951 * 12 11 9 14 14 C 1.53942 * 109.05650 * 72.84863 * 13 12 11 15 15 O 1.42584 * 109.23579 * 283.51885 * 14 13 12 16 16 C 1.43603 * 115.24861 * 114.13995 * 15 14 13 17 17 C 1.52733 * 110.65547 * 315.08092 * 16 15 14 18 18 C 1.45732 * 120.23868 * 180.02562 * 11 9 7 19 19 H 0.97007 * 120.00264 * 174.92946 * 1 2 3 20 20 H 1.08992 * 109.51824 * 188.72936 * 12 11 9 21 21 H 1.08997 * 109.51827 * 308.89926 * 12 11 9 22 22 H 1.08993 * 109.54213 * 312.95305 * 13 12 11 23 23 H 1.09003 * 109.47176 * 192.70400 * 13 12 11 24 24 H 1.09009 * 109.50904 * 163.59224 * 14 13 12 25 25 H 1.09003 * 109.51215 * 43.44955 * 14 13 12 26 26 H 1.09005 * 109.24198 * 194.78440 * 16 15 14 27 27 H 1.08997 * 109.24810 * 75.39081 * 16 15 14 28 28 H 1.09002 * 109.51762 * 165.70617 * 17 16 15 29 29 H 1.09005 * 109.51470 * 45.53609 * 17 16 15 30 30 H 1.08997 * 109.81627 * 342.62192 * 18 11 9 31 31 H 1.09008 * 109.81489 * 103.53010 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0466 1.4000 5 1 3.5382 1.4402 -0.7001 6 1 1.4381 2.6526 -0.7001 7 6 2.0069 -1.2128 0.0005 8 1 1.4853 -2.1376 -0.1973 9 6 3.4458 -1.2271 0.2690 10 8 4.0014 -0.2183 0.6619 11 7 4.1552 -2.3575 0.0810 12 6 3.4898 -3.5780 -0.3866 13 6 3.0494 -3.3784 -1.8369 14 6 4.2896 -3.4137 -2.7482 15 8 4.9887 -2.1759 -2.6383 16 6 6.2943 -2.2603 -2.0463 17 6 6.2651 -3.1441 -0.8009 18 6 5.5879 -2.3777 0.3472 19 1 -0.4851 -0.8368 -0.0742 20 1 4.1845 -4.4159 -0.3302 21 1 2.6209 -3.7815 0.2392 22 1 2.5504 -2.4146 -1.9370 23 1 2.3643 -4.1769 -2.1218 24 1 3.9777 -3.5652 -3.7817 25 1 4.9437 -4.2298 -2.4413 26 1 6.6285 -1.2604 -1.7693 27 1 6.9906 -2.6832 -2.7705 28 1 7.2843 -3.4033 -0.5143 29 1 5.7030 -4.0536 -1.0130 30 1 5.9707 -1.3579 0.3872 31 1 5.7808 -2.8831 1.2935 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001624520.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:11 Heat of formation + Delta-G solvation = -87.749230 kcal Electronic energy + Delta-G solvation = -15436.769358 eV Core-core repulsion = 12911.099584 eV Total energy + Delta-G solvation = -2525.669774 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.31893 -37.19453 -34.55811 -33.23530 -32.53599 -29.68020 -27.02289 -25.66425 -23.79118 -22.11607 -20.53205 -18.61100 -17.31291 -16.76850 -15.60364 -15.29906 -15.04301 -14.62813 -13.77729 -13.50293 -13.41176 -12.65252 -12.30938 -11.99263 -11.66740 -11.61410 -11.31931 -10.96518 -10.80879 -10.68878 -10.49522 -9.92593 -9.85961 -9.14362 -9.07486 -8.80309 -7.87300 -7.36119 -6.89374 -4.77346 3.65143 3.72152 4.08844 4.20755 4.37229 4.44553 4.66648 5.02860 5.17220 5.22987 5.44930 5.46080 5.61641 5.65808 5.81302 5.86801 5.92098 6.05668 6.13790 6.27264 6.36245 6.46645 6.51449 6.97910 7.39312 7.71985 7.84130 7.94006 8.25649 8.94595 9.10130 10.19503 10.42641 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036230 B = 0.012883 C = 0.011795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.646056 B = 2172.916095 C = 2373.359765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.063 3.937 3 Si 1.118 2.882 4 H -0.290 1.290 5 H -0.274 1.274 6 H -0.322 1.322 7 C -0.594 4.594 8 H 0.075 0.925 9 C 0.560 3.440 10 O -0.619 6.619 11 N -0.628 5.628 12 C 0.135 3.865 13 C -0.169 4.169 14 C 0.064 3.936 15 O -0.372 6.372 16 C 0.069 3.931 17 C -0.182 4.182 18 C 0.123 3.877 19 H 0.276 0.724 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.106 0.894 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.989 -9.011 -4.029 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.154 4.154 3 Si 0.950 3.050 4 H -0.217 1.217 5 H -0.200 1.200 6 H -0.254 1.254 7 C -0.630 4.630 8 H 0.093 0.907 9 C 0.370 3.630 10 O -0.512 6.512 11 N -0.362 5.362 12 C 0.011 3.989 13 C -0.208 4.208 14 C -0.013 4.013 15 O -0.291 6.291 16 C -0.008 4.008 17 C -0.220 4.220 18 C -0.001 4.001 19 H 0.087 0.913 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.124 0.876 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.962 -6.799 -3.815 11.879 hybrid contribution 0.199 -2.393 0.044 2.402 sum 9.162 -9.192 -3.771 13.515 Atomic orbital electron populations 1.70640 1.07687 1.31973 1.36208 1.27029 0.95242 1.04843 0.88309 0.82654 0.73571 0.71172 0.77583 1.21724 1.20010 1.25355 1.22079 0.91689 0.96636 1.52578 0.90691 1.18290 0.87915 0.80297 0.76487 1.90194 1.72592 1.32972 1.55423 1.47411 1.06252 1.11600 1.70957 1.21135 0.96427 0.87032 0.94288 1.22766 0.97527 1.05005 0.95455 1.22717 0.93387 0.86640 0.98579 1.88027 1.29454 1.30551 1.81032 1.22598 0.84793 1.00650 0.92728 1.22961 1.01279 1.00205 0.97540 1.21186 0.83315 1.01003 0.94584 0.91320 0.92443 0.92039 0.87592 0.91609 0.91922 0.93197 0.89506 0.94338 0.90888 0.90425 0.89685 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.50 13.64 55.55 0.76 -23.74 16 2 C 0.06 1.85 5.52 -17.37 -0.10 1.75 16 3 Si 1.12 30.43 26.40 -169.99 -4.49 25.95 16 4 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 5 H -0.27 -7.72 6.45 56.52 0.36 -7.36 16 6 H -0.32 -8.41 7.11 56.52 0.40 -8.00 16 7 C -0.59 -16.80 7.65 -35.63 -0.27 -17.07 16 8 H 0.08 2.06 6.06 -52.48 -0.32 1.74 16 9 C 0.56 15.28 7.08 -12.99 -0.09 15.18 16 10 O -0.62 -18.37 11.67 5.20 0.06 -18.31 16 11 N -0.63 -13.79 2.16 -175.44 -0.38 -14.17 16 12 C 0.14 2.47 4.94 -4.02 -0.02 2.45 16 13 C -0.17 -3.00 5.46 -26.30 -0.14 -3.14 16 14 C 0.06 1.00 6.19 37.65 0.23 1.24 16 15 O -0.37 -7.10 9.98 -35.23 -0.35 -7.45 16 16 C 0.07 1.08 6.56 37.02 0.24 1.32 16 17 C -0.18 -2.61 5.48 -26.48 -0.15 -2.75 16 18 C 0.12 2.28 6.10 -4.06 -0.02 2.26 16 19 H 0.28 7.75 8.73 -40.82 -0.36 7.39 16 20 H 0.06 0.86 6.03 -51.93 -0.31 0.55 16 21 H 0.06 1.18 7.31 -51.93 -0.38 0.80 16 22 H 0.11 2.37 5.88 -51.93 -0.31 2.07 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 25 H 0.05 0.67 5.59 -51.93 -0.29 0.38 16 26 H 0.09 1.43 7.86 -51.93 -0.41 1.02 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.06 3.56 -51.93 -0.19 0.88 16 30 H 0.08 1.75 6.84 -51.93 -0.36 1.40 16 31 H 0.04 0.70 8.14 -51.92 -0.42 0.27 16 LS Contribution 238.06 15.07 3.59 3.59 Total: -1.00 -32.80 238.06 -4.99 -37.78 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -3.86 Total: -4.89 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.32 Total: 1.25 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.38 Total: -37.91 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.29 Total: -25.76 kcal Atomic # 14 Polarization: 30.43 SS G_CDS: -4.49 Total: 25.95 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -32.80 -4.99 -37.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001624520.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.966 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds