Wall clock time and date at job start Sun Mar 29 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48496 * 109.47530 * 89.99986 * 3 2 1 5 5 H 1.48502 * 109.46790 * 210.00192 * 3 2 1 6 6 H 1.48501 * 109.46988 * 329.99521 * 3 2 1 7 7 C 1.40047 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99680 * 12.23610 * 7 2 1 9 9 C 1.46372 * 120.00219 * 192.22680 * 7 2 1 10 10 O 1.21686 * 119.99735 * 9.59899 * 9 7 2 11 11 N 1.34778 * 120.00190 * 189.60240 * 9 7 2 12 12 C 1.46656 * 120.23862 * 359.71675 * 11 9 7 13 13 C 1.52879 * 108.93440 * 69.04951 * 12 11 9 14 14 C 1.53942 * 109.05650 * 72.84863 * 13 12 11 15 15 O 1.42584 * 109.23579 * 283.51885 * 14 13 12 16 16 C 1.43603 * 115.24861 * 114.13995 * 15 14 13 17 17 C 1.52733 * 110.65547 * 315.08092 * 16 15 14 18 18 C 1.45732 * 120.23868 * 180.02562 * 11 9 7 19 19 H 0.97007 * 120.00264 * 174.92946 * 1 2 3 20 20 H 1.08992 * 109.51824 * 188.72936 * 12 11 9 21 21 H 1.08997 * 109.51827 * 308.89926 * 12 11 9 22 22 H 1.08993 * 109.54213 * 312.95305 * 13 12 11 23 23 H 1.09003 * 109.47176 * 192.70400 * 13 12 11 24 24 H 1.09009 * 109.50904 * 163.59224 * 14 13 12 25 25 H 1.09003 * 109.51215 * 43.44955 * 14 13 12 26 26 H 1.09005 * 109.24198 * 194.78440 * 16 15 14 27 27 H 1.08997 * 109.24810 * 75.39081 * 16 15 14 28 28 H 1.09002 * 109.51762 * 165.70617 * 17 16 15 29 29 H 1.09005 * 109.51470 * 45.53609 * 17 16 15 30 30 H 1.08997 * 109.81627 * 342.62192 * 18 11 9 31 31 H 1.09008 * 109.81489 * 103.53010 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0466 1.4000 5 1 3.5382 1.4402 -0.7001 6 1 1.4381 2.6526 -0.7001 7 6 2.0069 -1.2128 0.0005 8 1 1.4853 -2.1376 -0.1973 9 6 3.4458 -1.2271 0.2690 10 8 4.0014 -0.2183 0.6619 11 7 4.1552 -2.3575 0.0810 12 6 3.4898 -3.5780 -0.3866 13 6 3.0494 -3.3784 -1.8369 14 6 4.2896 -3.4137 -2.7482 15 8 4.9887 -2.1759 -2.6383 16 6 6.2943 -2.2603 -2.0463 17 6 6.2651 -3.1441 -0.8009 18 6 5.5879 -2.3777 0.3472 19 1 -0.4851 -0.8368 -0.0742 20 1 4.1845 -4.4159 -0.3302 21 1 2.6209 -3.7815 0.2392 22 1 2.5504 -2.4146 -1.9370 23 1 2.3643 -4.1769 -2.1218 24 1 3.9777 -3.5652 -3.7817 25 1 4.9437 -4.2298 -2.4413 26 1 6.6285 -1.2604 -1.7693 27 1 6.9906 -2.6832 -2.7705 28 1 7.2843 -3.4033 -0.5143 29 1 5.7030 -4.0536 -1.0130 30 1 5.9707 -1.3579 0.3872 31 1 5.7808 -2.8831 1.2935 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001624520.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:11 Heat of formation + Delta-G solvation = -111.683316 kcal Electronic energy + Delta-G solvation = -15437.807218 eV Core-core repulsion = 12911.099584 eV Total energy + Delta-G solvation = -2526.707634 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89257 -38.93218 -36.29763 -35.16678 -34.15754 -31.20042 -28.75253 -27.35681 -25.36838 -23.46199 -22.16160 -20.41065 -19.29245 -18.16074 -17.22856 -16.87741 -16.65828 -16.08348 -15.75970 -15.20449 -14.94520 -14.49850 -14.26003 -13.80510 -13.13135 -13.01026 -12.78572 -12.70712 -12.26915 -12.15101 -12.09903 -11.96919 -11.29687 -11.12521 -11.05951 -10.44283 -10.03375 -9.17613 -9.08737 -6.98391 1.43521 1.51483 1.94125 2.21101 2.39664 2.76278 3.07272 3.38769 3.79782 3.94200 3.98973 4.19635 4.27878 4.47594 4.52749 4.61162 4.67087 4.76283 4.84161 4.92542 4.98092 5.14162 5.18275 5.48723 5.53809 5.61969 5.95504 6.28733 6.53476 6.72468 7.12317 8.10059 8.17927 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036230 B = 0.012883 C = 0.011795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.646056 B = 2172.916095 C = 2373.359765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.030 3.970 3 Si 1.149 2.851 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.305 1.305 7 C -0.602 4.602 8 H 0.075 0.925 9 C 0.553 3.447 10 O -0.651 6.651 11 N -0.626 5.626 12 C 0.130 3.870 13 C -0.167 4.167 14 C 0.064 3.936 15 O -0.415 6.415 16 C 0.060 3.940 17 C -0.166 4.166 18 C 0.113 3.887 19 H 0.277 0.723 20 H 0.104 0.896 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 -11.248 -4.612 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.184 4.184 3 Si 0.980 3.020 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.236 1.236 7 C -0.639 4.639 8 H 0.093 0.907 9 C 0.360 3.640 10 O -0.546 6.546 11 N -0.358 5.358 12 C 0.007 3.993 13 C -0.206 4.206 14 C -0.013 4.013 15 O -0.335 6.335 16 C -0.016 4.016 17 C -0.203 4.203 18 C -0.010 4.010 19 H 0.087 0.913 20 H 0.122 0.878 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.113 0.887 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.556 -9.077 -4.409 14.604 hybrid contribution -0.226 -1.787 0.227 1.815 sum 10.330 -10.864 -4.182 15.564 Atomic orbital electron populations 1.70642 1.07792 1.32097 1.37749 1.27588 0.95684 1.06555 0.88600 0.82209 0.72197 0.70499 0.77058 1.22160 1.22279 1.23559 1.22211 0.92800 0.96422 1.52425 0.90697 1.18272 0.87983 0.81496 0.76254 1.90160 1.73122 1.34652 1.56645 1.47364 1.07771 1.11184 1.69514 1.21407 0.96939 0.86727 0.94239 1.22700 0.98968 1.03126 0.95780 1.22842 0.92713 0.86617 0.99081 1.87989 1.31145 1.32798 1.81519 1.22778 0.84235 1.00332 0.94245 1.22878 1.03210 0.99392 0.94829 1.21455 0.81323 1.00562 0.97652 0.91277 0.87833 0.93413 0.92847 0.88691 0.90342 0.89718 0.91619 0.90724 0.86866 0.88831 0.92622 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.61 13.64 21.83 0.30 -50.31 16 2 C 0.03 1.77 5.52 85.30 0.47 2.24 16 3 Si 1.15 63.17 26.40 68.60 1.81 64.98 16 4 H -0.29 -16.19 7.11 99.48 0.71 -15.48 16 5 H -0.29 -17.10 6.45 99.48 0.64 -16.46 16 6 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 7 C -0.60 -34.70 7.65 24.83 0.19 -34.51 16 8 H 0.07 4.21 6.06 -2.91 -0.02 4.19 16 9 C 0.55 30.46 7.08 86.36 0.61 31.07 16 10 O -0.65 -39.40 11.67 -4.30 -0.05 -39.45 16 11 N -0.63 -26.77 2.16 -827.20 -1.78 -28.56 16 12 C 0.13 4.42 4.94 86.31 0.43 4.84 16 13 C -0.17 -5.61 5.46 30.87 0.17 -5.44 16 14 C 0.06 1.79 6.19 72.30 0.45 2.24 16 15 O -0.41 -15.08 9.98 -148.98 -1.49 -16.57 16 16 C 0.06 1.71 6.56 71.89 0.47 2.18 16 17 C -0.17 -4.01 5.48 30.76 0.17 -3.85 16 18 C 0.11 3.95 6.10 86.78 0.53 4.48 16 19 H 0.28 15.78 8.73 -92.70 -0.81 14.97 16 20 H 0.10 2.58 6.03 -2.39 -0.01 2.57 16 21 H 0.05 1.76 7.31 -2.39 -0.02 1.74 16 22 H 0.05 2.40 5.88 -2.39 -0.01 2.38 16 23 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.08 1.78 5.59 -2.39 -0.01 1.77 16 26 H 0.07 2.11 7.86 -2.38 -0.02 2.09 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 1.99 3.56 -2.38 -0.01 1.98 16 30 H 0.06 2.28 6.84 -2.39 -0.02 2.26 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -73.06 238.06 3.30 -69.76 By element: Atomic # 1 Polarization: -4.15 SS G_CDS: 1.03 Total: -3.13 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 3.48 Total: 3.27 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.49 Total: -78.87 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -1.54 Total: -56.02 kcal Atomic # 14 Polarization: 63.17 SS G_CDS: 1.81 Total: 64.98 kcal Total: -73.06 3.30 -69.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001624520.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.919 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds