Wall clock time and date at job start Sun Mar 29 2020 21:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00001 * 2 1 4 4 H 1.48497 * 109.47051 * 269.99524 * 3 2 1 5 5 H 1.48497 * 109.47035 * 29.99602 * 3 2 1 6 6 H 1.48499 * 109.47102 * 149.99859 * 3 2 1 7 7 C 1.37878 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00291 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99802 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.36465 * 119.83269 * 89.99770 * 10 9 7 12 12 C 1.35499 * 119.24049 * 180.02562 * 11 10 9 13 13 F 1.35097 * 120.52626 * 179.97438 * 12 11 10 14 14 C 1.41145 * 118.94379 * 0.02562 * 12 11 10 15 15 N 1.37633 * 120.18522 * 179.97438 * 14 12 11 16 16 N 1.32642 * 119.63052 * 359.97438 * 14 12 11 17 17 C 1.33177 * 120.73814 * 0.02562 * 16 14 12 18 18 O 1.22002 * 119.44243 * 179.97438 * 17 16 14 19 19 H 0.97000 * 120.00367 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47327 * 59.99041 * 9 7 2 21 21 H 1.09005 * 109.46447 * 299.99275 * 9 7 2 22 22 H 1.08004 * 120.37415 * 359.74724 * 11 10 9 23 23 H 0.96997 * 119.99767 * 180.02562 * 15 14 12 24 24 H 0.96993 * 119.99880 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.2265 -3.2151 -1.1839 12 6 4.6775 -4.4928 -1.1700 13 9 4.9101 -5.1510 -2.3267 14 6 4.8995 -5.1254 0.0721 15 7 5.3569 -6.4227 0.1160 16 7 4.6647 -4.4625 1.1968 17 6 4.2215 -3.2070 1.1671 18 8 4.0129 -2.6198 2.2160 19 1 -0.4851 0.8400 -0.0004 20 1 3.8745 -0.6808 0.8904 21 1 3.8751 -0.6798 -0.8896 22 1 4.0441 -2.7104 -2.1212 23 1 5.5081 -6.8549 0.9711 24 1 5.5280 -6.9047 -0.7081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001821443.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:28 Heat of formation + Delta-G solvation = -57.292554 kcal Electronic energy + Delta-G solvation = -13876.557728 eV Core-core repulsion = 11125.208006 eV Total energy + Delta-G solvation = -2751.349722 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.065 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.84461 -42.46330 -38.45568 -37.42879 -35.10121 -33.83029 -31.77797 -29.68453 -25.66403 -25.10772 -23.41764 -20.47488 -19.32182 -18.92035 -18.68925 -17.35985 -17.23063 -16.84574 -16.28281 -15.98434 -15.65175 -15.21848 -14.55483 -14.28387 -13.92049 -13.64470 -13.41816 -12.73073 -12.45383 -11.97164 -11.86022 -11.62308 -10.87770 -10.77218 -10.14230 -9.26567 -8.39705 -6.50499 -0.19531 0.58113 1.34887 1.39144 1.49976 1.62080 2.23239 2.29135 2.76671 2.80873 2.95654 3.53550 3.68958 4.16289 4.33123 4.62907 4.71381 5.22187 5.27289 5.45962 5.96900 6.06968 6.42879 6.51042 6.97358 7.13625 7.24687 8.76805 Molecular weight = 213.07amu Principal moments of inertia in cm(-1) A = 0.046273 B = 0.009125 C = 0.008450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.959197 B = 3067.632300 C = 3312.619128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.020 3.980 3 Si 0.951 3.049 4 H -0.241 1.241 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.553 4.553 8 H 0.028 0.972 9 C 0.206 3.794 10 N -0.506 5.506 11 C 0.185 3.815 12 C -0.104 4.104 13 F -0.113 7.113 14 C 0.490 3.510 15 N -0.785 5.785 16 N -0.632 5.632 17 C 0.641 3.359 18 O -0.592 6.592 19 H 0.273 0.727 20 H 0.043 0.957 21 H 0.087 0.913 22 H 0.218 0.782 23 H 0.423 0.577 24 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.939 -8.989 -8.023 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.164 1.164 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.591 4.591 8 H 0.046 0.954 9 C 0.085 3.915 10 N -0.218 5.218 11 C 0.047 3.953 12 C -0.134 4.134 13 F -0.092 7.092 14 C 0.228 3.772 15 N -0.331 5.331 16 N -0.386 5.386 17 C 0.341 3.659 18 O -0.470 6.470 19 H 0.082 0.918 20 H 0.062 0.938 21 H 0.105 0.895 22 H 0.234 0.766 23 H 0.256 0.744 24 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 12.684 -8.610 -6.492 16.648 hybrid contribution -0.386 0.460 -0.549 0.814 sum 12.298 -8.150 -7.042 16.348 Atomic orbital electron populations 1.70030 1.08422 1.28884 1.50285 1.25845 0.95702 1.03490 0.92980 0.85679 0.79199 0.77498 0.80451 1.16439 1.20830 1.17485 1.21255 0.90352 0.93793 1.53662 0.95377 1.20076 0.94153 0.76871 1.00432 1.46371 1.52378 1.16849 1.06156 1.22771 0.87892 0.91862 0.92745 1.16681 1.21768 0.92940 0.82045 1.91512 1.93799 1.79384 1.44513 1.19155 0.82818 0.87466 0.87736 1.42046 1.67679 1.08785 1.14545 1.69410 1.34095 1.08430 1.26655 1.17656 0.80074 0.84566 0.83555 1.90915 1.57850 1.66316 1.31952 0.91800 0.93850 0.89504 0.76572 0.74378 0.73338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.48 13.96 21.45 0.30 -57.18 14 2 C 0.02 1.11 5.47 84.65 0.46 1.57 14 3 Si 0.95 41.41 27.47 68.60 1.88 43.29 14 4 H -0.24 -9.28 7.11 99.48 0.71 -8.58 14 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 14 6 H -0.25 -10.45 6.54 99.48 0.65 -9.80 14 7 C -0.55 -31.42 9.94 25.60 0.25 -31.17 14 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 14 9 C 0.21 9.49 4.17 85.64 0.36 9.85 14 10 N -0.51 -21.18 2.58 -661.61 -1.71 -22.89 14 11 C 0.19 5.60 10.38 83.34 0.87 6.47 14 12 C -0.10 -2.74 7.31 22.35 0.16 -2.58 14 13 F -0.11 -2.37 16.71 44.97 0.75 -1.62 14 14 C 0.49 14.01 7.81 133.95 1.05 15.06 14 15 N -0.79 -13.39 9.01 -54.86 -0.49 -13.88 14 16 N -0.63 -25.20 10.51 -323.50 -3.40 -28.60 14 17 C 0.64 30.65 8.33 179.62 1.50 32.14 14 18 O -0.59 -34.22 16.72 -5.32 -0.09 -34.31 14 19 H 0.27 15.44 8.31 -92.71 -0.77 14.67 14 20 H 0.04 2.18 6.44 -2.39 -0.02 2.16 14 21 H 0.09 3.24 7.46 -2.38 -0.02 3.22 14 22 H 0.22 4.77 8.06 -2.91 -0.02 4.75 14 23 H 0.42 6.11 8.95 -92.71 -0.83 5.28 14 24 H 0.43 4.47 8.35 -92.71 -0.77 3.69 14 Total: -1.00 -79.85 226.75 1.50 -78.36 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -0.39 Total: 5.50 kcal Atomic # 6 Polarization: 26.70 SS G_CDS: 4.65 Total: 31.34 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -5.31 Total: -122.55 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.09 Total: -34.31 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.75 Total: -1.62 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.88 Total: 43.29 kcal Total: -79.85 1.50 -78.36 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001821443.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.063 kcal (2) G-P(sol) polarization free energy of solvation -79.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds