Wall clock time and date at job start Sun Mar 29 2020 21:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29416 * 125.54001 * 2 1 4 4 N 1.26250 * 117.89519 * 179.97438 * 3 2 1 5 5 C 1.30661 * 116.23384 * 0.02562 * 4 3 2 6 6 N 1.38254 * 126.22449 * 179.97438 * 5 4 3 7 7 C 1.34781 * 120.00200 * 0.02562 * 6 5 4 8 8 O 1.21813 * 119.99545 * 359.97438 * 7 6 5 9 9 C 1.41525 * 120.00471 * 179.72618 * 7 6 5 10 10 H 1.08002 * 119.99554 * 0.26976 * 9 7 6 11 11 C 1.40155 * 120.00052 * 180.27538 * 9 7 6 12 12 N 1.30614 * 120.00490 * 359.97438 * 11 9 7 13 13 Si 1.86808 * 119.99765 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47268 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47094 * 120.00037 * 13 11 9 16 16 H 1.48503 * 109.46841 * 239.99643 * 13 11 9 17 17 S 1.71284 * 125.53795 * 180.31899 * 2 1 3 18 18 H 1.08999 * 109.47327 * 90.02378 * 1 2 3 19 19 H 1.09000 * 109.46845 * 210.02821 * 1 2 3 20 20 H 1.09002 * 109.47006 * 330.02187 * 1 2 3 21 21 H 0.97000 * 120.00486 * 180.02562 * 6 5 4 22 22 H 0.96999 * 120.00332 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0531 0.0000 4 7 3.5105 0.8851 0.0005 5 6 3.9271 -0.3533 0.0004 6 7 5.2446 -0.7722 0.0004 7 6 6.2405 0.1360 0.0010 8 8 5.9796 1.3259 0.0010 9 6 7.5893 -0.2927 0.0068 10 1 7.8205 -1.3477 0.0064 11 6 8.6248 0.6518 0.0132 12 7 8.3451 1.9276 0.0133 13 14 10.4050 0.0858 0.0202 14 1 10.4527 -1.3984 0.0183 15 1 11.0943 0.6052 -1.1882 16 1 11.0834 0.6009 1.2367 17 16 2.5026 -1.3938 -0.0078 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8897 0.5143 20 1 -0.3633 0.8902 0.5135 21 1 5.4524 -1.7197 0.0000 22 1 9.0618 2.5813 0.0181 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002492681.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:36 Heat of formation + Delta-G solvation = 27.423724 kcal Electronic energy + Delta-G solvation = -11602.303696 eV Core-core repulsion = 9285.007629 eV Total energy + Delta-G solvation = -2317.296067 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.34429 -37.88241 -34.03932 -32.59368 -31.85629 -28.06212 -26.52957 -24.32638 -21.58093 -19.20963 -18.74525 -17.04567 -16.15921 -15.56464 -15.28986 -14.18744 -13.64611 -13.41040 -12.77705 -12.66492 -12.43825 -12.32261 -11.46083 -11.24959 -10.81241 -10.40044 -10.16060 -9.92865 -9.37502 -9.14801 -9.05215 -7.85226 -7.58863 -6.49440 -5.05653 1.21094 1.21605 1.85667 2.98865 3.07178 3.12268 3.38224 3.83479 4.12437 4.32687 4.83831 5.32359 5.56613 5.57289 5.75545 5.90625 6.15974 7.10524 7.22334 7.62372 7.85078 8.65462 8.89522 9.48341 10.24123 10.42168 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.091684 B = 0.007443 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.324943 B = 3761.183449 C = 4051.353566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.055 4.055 3 N -0.237 5.237 4 N -0.276 5.276 5 C 0.297 3.703 6 N -0.630 5.630 7 C 0.526 3.474 8 O -0.515 6.515 9 C -0.529 4.529 10 H 0.075 0.925 11 C 0.084 3.916 12 N -0.740 5.740 13 Si 0.920 3.080 14 H -0.261 1.261 15 H -0.273 1.273 16 H -0.273 1.273 17 S 0.023 5.977 18 H 0.078 0.922 19 H 0.074 0.926 20 H 0.085 0.915 21 H 0.405 0.595 22 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 -8.751 -0.006 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.339 4.339 3 N -0.074 5.074 4 N -0.123 5.123 5 C -0.074 4.074 6 N -0.280 5.280 7 C 0.332 3.668 8 O -0.391 6.391 9 C -0.565 4.565 10 H 0.093 0.907 11 C -0.140 4.140 12 N -0.367 5.367 13 Si 0.743 3.257 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.198 1.198 17 S 0.259 5.741 18 H 0.097 0.903 19 H 0.093 0.907 20 H 0.103 0.897 21 H 0.241 0.759 22 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.645 -7.320 -0.015 10.584 hybrid contribution 0.991 -0.851 -0.001 1.306 sum -6.654 -8.171 -0.016 10.538 Atomic orbital electron populations 1.20124 0.84923 1.03526 1.03183 1.28235 1.02603 0.90326 1.12716 1.70970 0.97981 1.27187 1.11300 1.72322 1.02866 1.13464 1.23629 1.27777 0.92063 0.90288 0.97288 1.44519 0.99653 1.11944 1.71888 1.17471 0.84202 0.85294 0.79802 1.90834 1.81652 1.14888 1.51719 1.19952 0.88872 0.94800 1.52828 0.90656 1.25801 1.01349 0.94280 0.92545 1.70005 1.34258 1.01435 1.30992 0.86110 0.81049 0.79919 0.78588 1.18432 1.19771 1.19774 1.84320 1.01246 1.13141 1.75364 0.90341 0.90738 0.89656 0.75899 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.48 36.01 0.38 -0.27 14 2 C -0.06 -0.95 7.52 -13.30 -0.10 -1.05 14 3 N -0.24 -5.27 11.56 32.59 0.38 -4.89 14 4 N -0.28 -7.10 9.89 30.96 0.31 -6.79 14 5 C 0.30 6.63 8.40 -87.23 -0.73 5.90 14 6 N -0.63 -14.24 5.36 -14.35 -0.08 -14.31 14 7 C 0.53 14.71 7.52 -15.00 -0.11 14.60 14 8 O -0.51 -16.79 13.57 5.09 0.07 -16.72 14 9 C -0.53 -14.02 9.30 -37.61 -0.35 -14.37 14 10 H 0.08 1.76 7.85 -52.49 -0.41 1.35 14 11 C 0.08 2.22 5.50 -17.35 -0.10 2.12 14 12 N -0.74 -21.28 11.73 55.56 0.65 -20.63 14 13 Si 0.92 18.81 29.56 -169.99 -5.02 13.78 14 14 H -0.26 -5.08 7.11 56.52 0.40 -4.68 14 15 H -0.27 -5.49 7.11 56.52 0.40 -5.08 14 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 17 S 0.02 0.37 23.28 -107.50 -2.50 -2.13 14 18 H 0.08 0.78 8.14 -51.93 -0.42 0.36 14 19 H 0.07 0.67 8.14 -51.93 -0.42 0.25 14 20 H 0.08 0.93 8.14 -51.93 -0.42 0.51 14 21 H 0.41 7.32 8.78 -40.82 -0.36 6.96 14 22 H 0.28 7.12 8.29 -40.82 -0.34 6.78 14 LS Contribution 224.33 15.07 3.38 3.38 Total: -1.00 -35.03 224.33 -5.01 -40.03 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -1.17 Total: 1.36 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.01 Total: 6.93 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 1.26 Total: -46.63 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.07 Total: -16.72 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.50 Total: -2.13 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -35.03 -5.01 -40.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002492681.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.456 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds