Wall clock time and date at job start Sun Mar 29 2020 21:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29416 * 125.54001 * 2 1 4 4 N 1.26250 * 117.89519 * 179.97438 * 3 2 1 5 5 C 1.30661 * 116.23384 * 0.02562 * 4 3 2 6 6 N 1.38254 * 126.22449 * 179.97438 * 5 4 3 7 7 C 1.34781 * 120.00200 * 0.02562 * 6 5 4 8 8 O 1.21813 * 119.99545 * 359.97438 * 7 6 5 9 9 C 1.41525 * 120.00471 * 179.72618 * 7 6 5 10 10 H 1.08002 * 119.99554 * 0.26976 * 9 7 6 11 11 C 1.40155 * 120.00052 * 180.27538 * 9 7 6 12 12 N 1.30614 * 120.00490 * 359.97438 * 11 9 7 13 13 Si 1.86808 * 119.99765 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47268 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47094 * 120.00037 * 13 11 9 16 16 H 1.48503 * 109.46841 * 239.99643 * 13 11 9 17 17 S 1.71284 * 125.53795 * 180.31899 * 2 1 3 18 18 H 1.08999 * 109.47327 * 90.02378 * 1 2 3 19 19 H 1.09000 * 109.46845 * 210.02821 * 1 2 3 20 20 H 1.09002 * 109.47006 * 330.02187 * 1 2 3 21 21 H 0.97000 * 120.00486 * 180.02562 * 6 5 4 22 22 H 0.96999 * 120.00332 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0531 0.0000 4 7 3.5105 0.8851 0.0005 5 6 3.9271 -0.3533 0.0004 6 7 5.2446 -0.7722 0.0004 7 6 6.2405 0.1360 0.0010 8 8 5.9796 1.3259 0.0010 9 6 7.5893 -0.2927 0.0068 10 1 7.8205 -1.3477 0.0064 11 6 8.6248 0.6518 0.0132 12 7 8.3451 1.9276 0.0133 13 14 10.4050 0.0858 0.0202 14 1 10.4527 -1.3984 0.0183 15 1 11.0943 0.6052 -1.1882 16 1 11.0834 0.6009 1.2367 17 16 2.5026 -1.3938 -0.0078 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8897 0.5143 20 1 -0.3633 0.8902 0.5135 21 1 5.4524 -1.7197 0.0000 22 1 9.0618 2.5813 0.0181 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002492681.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:36 Heat of formation + Delta-G solvation = -0.288354 kcal Electronic energy + Delta-G solvation = -11603.505382 eV Core-core repulsion = 9285.007629 eV Total energy + Delta-G solvation = -2318.497753 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.97783 -39.80865 -35.88330 -34.62236 -33.26009 -29.79353 -28.25801 -25.86417 -23.36302 -20.85609 -20.48926 -18.80794 -17.84486 -17.48777 -16.88753 -15.89127 -15.06538 -15.04003 -14.67312 -14.10906 -13.77060 -13.38275 -13.22680 -12.86685 -12.80875 -11.97460 -11.91664 -11.44974 -11.01316 -10.92979 -10.52380 -9.93859 -9.32957 -8.45428 -7.12703 -0.29578 -0.28816 0.38138 1.39226 1.40918 1.60818 1.75846 2.16645 2.38611 2.50482 3.54363 3.56136 4.07039 4.35314 4.72615 4.85352 5.14972 5.16216 5.61877 5.70704 5.94508 6.64611 7.04624 7.90004 8.28264 8.48076 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.091684 B = 0.007443 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.324943 B = 3761.183449 C = 4051.353566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.040 4.040 3 N -0.291 5.291 4 N -0.337 5.337 5 C 0.246 3.754 6 N -0.629 5.629 7 C 0.513 3.487 8 O -0.578 6.578 9 C -0.550 4.550 10 H 0.105 0.895 11 C 0.026 3.974 12 N -0.800 5.800 13 Si 1.012 2.988 14 H -0.238 1.238 15 H -0.268 1.268 16 H -0.268 1.268 17 S 0.146 5.854 18 H 0.103 0.897 19 H 0.110 0.890 20 H 0.092 0.908 21 H 0.425 0.575 22 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.561 -11.645 -0.025 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.324 4.324 3 N -0.128 5.128 4 N -0.183 5.183 5 C -0.125 4.125 6 N -0.281 5.281 7 C 0.320 3.680 8 O -0.459 6.459 9 C -0.585 4.585 10 H 0.123 0.877 11 C -0.193 4.193 12 N -0.428 5.428 13 Si 0.829 3.171 14 H -0.161 1.161 15 H -0.193 1.193 16 H -0.193 1.193 17 S 0.384 5.616 18 H 0.122 0.878 19 H 0.129 0.871 20 H 0.111 0.889 21 H 0.264 0.736 22 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.528 -10.279 -0.033 13.355 hybrid contribution 0.909 -0.070 0.001 0.912 sum -7.618 -10.349 -0.032 12.850 Atomic orbital electron populations 1.20520 0.80586 1.05685 1.05424 1.29507 1.05262 0.90382 1.07226 1.70975 0.97375 1.29256 1.15189 1.72264 1.04956 1.16728 1.24319 1.27870 0.93541 0.91971 0.99111 1.43718 0.99659 1.12049 1.72682 1.17857 0.85847 0.85113 0.79137 1.90782 1.83235 1.17555 1.54356 1.20555 0.88920 0.96481 1.52566 0.87719 1.27200 1.07206 0.93926 0.90922 1.70186 1.36464 1.03523 1.32642 0.84767 0.73237 0.80442 0.78614 1.16053 1.19282 1.19288 1.83797 0.95786 1.09142 1.72846 0.87818 0.87129 0.88943 0.73629 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.15 10.48 71.24 0.75 -0.41 14 2 C -0.04 -1.28 7.52 88.46 0.67 -0.62 14 3 N -0.29 -13.08 11.56 -50.81 -0.59 -13.67 14 4 N -0.34 -17.96 9.89 -55.97 -0.55 -18.52 14 5 C 0.25 11.12 8.40 179.16 1.50 12.62 14 6 N -0.63 -28.96 5.36 -317.47 -1.70 -30.67 14 7 C 0.51 29.85 7.52 85.05 0.64 30.49 14 8 O -0.58 -39.98 13.57 -4.71 -0.06 -40.05 14 9 C -0.55 -29.57 9.30 23.55 0.22 -29.35 14 10 H 0.10 4.78 7.85 -2.91 -0.02 4.75 14 11 C 0.03 1.39 5.50 85.34 0.47 1.86 14 12 N -0.80 -48.04 11.73 21.85 0.26 -47.79 14 13 Si 1.01 38.38 29.56 68.60 2.03 40.41 14 14 H -0.24 -8.07 7.11 99.48 0.71 -7.36 14 15 H -0.27 -9.87 7.11 99.48 0.71 -9.17 14 16 H -0.27 -9.88 7.11 99.48 0.71 -9.17 14 17 S 0.15 4.31 23.28 -56.49 -1.32 2.99 14 18 H 0.10 1.56 8.14 -2.39 -0.02 1.55 14 19 H 0.11 1.35 8.14 -2.39 -0.02 1.33 14 20 H 0.09 1.71 8.14 -2.39 -0.02 1.69 14 21 H 0.42 15.18 8.78 -92.71 -0.81 14.37 14 22 H 0.28 15.17 8.29 -92.71 -0.77 14.40 14 Total: -1.00 -83.06 224.33 2.76 -80.30 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.46 Total: 12.39 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 4.24 Total: 14.59 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -2.59 Total: -110.64 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.06 Total: -40.05 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.32 Total: 2.99 kcal Total: -83.06 2.76 -80.30 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002492681.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.011 kcal (2) G-P(sol) polarization free energy of solvation -83.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds